KEGG   Hymenobacter sp. APR13: N008_18860
Entry
N008_18860        CDS       T03213                                 
Name
(GenBank) hypothetical protein
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hym  Hymenobacter sp. APR13
Pathway
hym03030  DNA replication
hym03410  Base excision repair
hym03420  Nucleotide excision repair
hym03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hym00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    N008_18860
   03410 Base excision repair
    N008_18860
   03420 Nucleotide excision repair
    N008_18860
   03430 Mismatch repair
    N008_18860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hym03032]
    N008_18860
   03400 DNA repair and recombination proteins [BR:hym03400]
    N008_18860
Enzymes [BR:hym01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     N008_18860
DNA replication proteins [BR:hym03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     N008_18860
DNA repair and recombination proteins [BR:hym03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     N008_18860
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     N008_18860
   MMR (mismatch excision repair)
    DNA ligase
     N008_18860
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      N008_18860
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia BRCT_2 HHH Auto_anti-p27 ABC_tran_CTD
Other DBs
NCBI-ProteinID: AII54032
LinkDB
Position
4405907..4408123
AA seq 738 aa
MHHGRQPSFFEGALAQAEALATYFSMSTTDLQARITALTERLHHLNYQYYQRDISEIPDQ
DFDQLLAELAELEKQHPELAHPNSPTQRVGGTITKQFPTAAHRYPMLSLGNTYSEADLRE
FDERVQKGLEGADYAYVCELKFDGVAMSLTYENGQLTQGVTRGDGTRGDVVTSNVRTIKN
LPLHLRTAGPTQPPEFEVRGEIFMPQPVFAELNAEREENGEALLANPRNAASGALKLQDS
ALVAARRLRFYAYSFLMPGRSSFPTHSASLEALSAWGLPVSDTWRRCNSLAEVLDFVHEW
DKKRFTLPVATDGIVIKIDDFRQQELLGYTAKSPRWAIAYKYPAEAGRTRLRYVQYQVGR
TGAVTPVALLDPVPLAGTVVKRASMHNANQIAALDIRLNDMVFVEKGGEIIPKITGVDLT
ARPADSQPIVYPTACPVCNTPLIRPEGEAHFRCPNDRGCPPQLKAKLEHYVSRKALNIDG
LGAETVGRFFDLGLVTDAASLYDLPAKAAELAQLDRMGEKSVQRLLAGLEQSKLVPFDQV
LFGLGIRYVGETVAEKLATHYRTIDALAQATATELAAVPEVGGVIAESAAAWFQEPQNQE
LVARLRAAGVQLELTGEAPQSLSNRLEGLTFVLSGVFELHSRDELLALIEAHGGKITGSI
SKKLSYLVAGDKMGPAKREKATGFKVPIISEAELLAMLPAGTETTPAPAVTAAAAEDSAP
SAANPTPVQGTGTQTSLF
NT seq 2217 nt   +upstreamnt  +downstreamnt
ttgcaccatggccggcagccctcctttttcgagggggcgctggcccaggcggaagccctt
gctacctacttctctatgtccaccaccgacctccaggcccgcattacggccctcaccgag
cgcctgcaccacctcaactaccaatattaccagcgcgacatcagcgagattcccgaccag
gatttcgaccagctgctggccgagctggccgagctggaaaagcagcaccccgagctggcc
caccccaactcgcccacccagcgcgtgggcggcaccatcaccaagcagttcccgacggcc
gcgcaccgctaccccatgctcagcctcggcaacacctactccgaagccgacctgcgcgag
ttcgatgagcgggtgcaaaagggcctggagggcgccgactacgcctacgtctgcgagctg
aagttcgacggcgtggccatgagcctcacttacgaaaacggccagctcacgcagggcgtc
acgcgcggcgacggtacccgcggcgacgtggtaaccagcaacgtgcgcaccatcaagaac
ctgccgctgcacctgcgcacggccggccccacccagccgccggagtttgaggtgcgcggc
gaaatcttcatgccccagccggtatttgccgagttgaacgccgagcgcgaggaaaacggc
gaggccctgctggccaacccgcgcaacgccgccagcggcgccctcaagctccaggattcg
gcgctggtggcggcccggcggctgcgcttctacgcctactcgttcctgatgccgggccgc
agcagcttccccacccacagcgcctcgctggaagccttgagtgcctggggcctgcccgtg
tcggacacgtggcggcggtgcaactccctagccgaggtgctggatttcgtgcacgagtgg
gacaaaaagcgcttcacgctgcccgtcgccaccgacggcatcgttatcaagattgacgat
ttccggcagcaggagctgctgggctacacggccaaaagcccgcgctgggccattgcctac
aagtacccggcggaagcgggccgcacccgcctgcgctacgtgcagtaccaggtgggccgc
accggcgccgtcacgcccgtggccctgctcgaccccgtgccgctggctggcaccgtggtc
aagcgcgcttccatgcacaacgccaaccagattgccgccctcgatatccgcctcaacgac
atggtgttcgtggagaaaggcggcgaaatcatccccaaaatcaccggcgtggacctcacc
gcccgccccgccgacagccagcccatcgtgtaccccacggcctgcccggtctgcaacacg
cccctgatccggcccgagggcgaggcccatttccgctgccccaacgaccggggctgcccg
ccccaattgaaggccaagctggagcattatgtttcgcgcaaggccctgaacatcgatggg
ctgggcgccgaaaccgtgggccgcttcttcgatttgggcctcgtgacggacgcggccagc
ctctacgacctgcccgccaaagccgccgagctggcccagctcgaccggatgggcgagaag
tcggtgcagcggctgctggcggggctggagcaaagcaagctggtgccgtttgaccaagtc
ctgtttggcctgggcatccggtacgtgggcgaaaccgtggccgagaagctggccactcac
taccgcaccatcgacgcgctggcgcaggccacagccaccgagctggccgccgtgccggaa
gtgggcggcgtcattgccgagtcggcggcggcgtggtttcaggagccgcaaaaccaggag
ctggtggcgcggttgcgggcggcgggcgtgcagctggagctaaccggcgaagcgccgcaa
tccctaagcaaccgcctcgaaggcctcacgtttgtgctgtcgggcgtgtttgagctgcac
tcccgcgacgagctgctggccctgattgaggcgcacggcggcaaaatcacgggcagcatc
agcaagaagcttagctacttggtggccggcgacaaaatgggcccggccaagcgcgaaaaa
gccaccggcttcaaggtgcccatcatcagcgaagccgagctgctggccatgctgcccgca
ggtacagaaaccacgcctgctcccgcggtaacagccgccgctgcagaagattctgctccg
tcagcagcaaacccaacgccagtacagggcaccggaacgcagacttcgctgttctag

DBGET integrated database retrieval system