Hydrogenophaga sp. BPS33: F9K07_14430
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Entry
F9K07_14430 CDS
T06379
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03030
DNA replication
hyn03410
Base excision repair
hyn03420
Nucleotide excision repair
hyn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9K07_14430 (ligA)
03410 Base excision repair
F9K07_14430 (ligA)
03420 Nucleotide excision repair
F9K07_14430 (ligA)
03430 Mismatch repair
F9K07_14430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyn03032
]
F9K07_14430 (ligA)
03400 DNA repair and recombination proteins [BR:
hyn03400
]
F9K07_14430 (ligA)
Enzymes [BR:
hyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F9K07_14430 (ligA)
DNA replication proteins [BR:
hyn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F9K07_14430 (ligA)
DNA repair and recombination proteins [BR:
hyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F9K07_14430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F9K07_14430 (ligA)
MMR (mismatch excision repair)
DNA ligase
F9K07_14430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F9K07_14430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
DUF4796_N
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QHE86014
UniProt:
A0A6P1IW71
LinkDB
All DBs
Position
3130266..3132344
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AA seq
692 aa
AA seq
DB search
MTSDLFAEPASPAERAAELRAQLHYHAHRYYTQDDPEIPDAAYDALFRELQAIESAHPEL
LTPDSPTQRVGGAILKELAPVRHAVPMLSIRTETDTEASGAVAFDARVRRELRLGESDPP
VDYLAELKFDGLAMSLRYEQGVLVRAATRGDGETGEDVTHNVRTIGQIPLRLPAEVPEVL
EVRGEVYMRRDQFEALNERQREKIASGAKGEKTFVNPRNAAAGAVRQLDSKIASERPLSF
FVYSWGEVLGDAQPPATQYDWLMRLKAWGFPVAEQTTRCRGADDLVAFHQRIGALRDSLP
FDIDGVVYKVDSLDLQKQIGFVSREPRWAVAHKYPAQEQLTTVQAIDVQVGRTGKLTPVA
KLAPVFVGGVTVTNATLHNELEARRKDVRVGDTVVVRRAGDVIPEVVSVLADKRVGDPPP
FTMPSQCPVCGSDAVREEGEADHRCTGGLFCAAQRKEAILHYAHRRAVEVEGLGDKLVEQ
LVDSGLIKTLPDLYKLGFTALAGLERMAEKSANNIVAALEKSKHTTLPRFLFGLGIRHVG
EATAKDLARHFGNLDRVMAASVDELLQVNDVGPVVAQSIHTFFEQPHNREVVAQLRAAGV
TWSENEGEQNTPQPLLGKTFVLTGTFPTLTRDQAKDLLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLDKAQTLGVAVIDEAAMLDMLQPPAGG
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgacctctgatctttttgccgagcctgcgtcgccggccgagcgcgccgccgagctgcgc
gcacaactgcattaccacgcccaccgctactacacacaggacgatccggagattccggac
gcggcctacgacgcgctgtttcgcgaactgcaggccatcgagtccgcgcaccccgagctc
ttgacccccgattcgccgacccagcgcgtgggcggcgccatcctcaaggaattggcgccc
gtgcggcacgccgtgcccatgctcagcatccgcaccgagaccgacaccgaggccagcggc
gcggtggcgttcgacgcacgggtgcggcgcgagctgcgcctgggcgagtcggacccccct
gtggattacctggccgaactcaagttcgacggtctggccatgagcctgcgctacgaacag
ggcgtgctggtgcgggccgctacgcgcggcgatggcgaaaccggggaagacgtgacgcac
aacgtgcgcacgatcgggcagatcccgttgcgcctgccggccgaggtgcccgaggtgctg
gaagtgcgtggcgaggtctacatgcgccgcgaccagttcgaggcgctcaacgagcgccag
cgcgagaagatcgccagcggcgccaagggcgagaagaccttcgtaaacccgcgcaacgcc
gcagcgggcgccgtgcgccagctcgattcgaagatcgccagcgaacggccgttgagtttt
ttcgtgtattcctggggtgaggtgctgggcgatgcccaaccgccggccacgcagtacgac
tggctcatgcgcctgaaagcctggggcttccccgtggccgagcagaccacccgctgccgg
ggtgcggacgacctggtggcgttccaccagcgcattggcgccctgcgcgacagcctgccg
ttcgacatcgacggtgtggtctacaaggtcgactcgctggacctgcagaagcagatcggc
ttcgtctcgcgcgagccccgctgggcggtggcgcacaagtacccggcgcaggaacagctc
accacggtgcaggcgatcgacgtgcaggtggggcgcaccggcaagctcacgccggtggcc
aagctcgcgcccgtgttcgtgggcggcgtcacggtgaccaatgcgaccttgcacaacgaa
ctggaagcgcgccgcaaggacgtgcgcgtgggcgacacggtggtcgtgcgccgcgcgggc
gacgtgattcccgaggtggtgtccgtgctggcggacaagcgcgtgggcgatccgccgccg
ttcaccatgccgagccagtgcccggtctgcggcagcgatgccgtgcgcgaggagggcgag
gccgaccaccgctgcaccggtggcctgttctgcgccgcgcagcgcaaggaagccatcctg
cactacgcgcaccgccgcgcggtggaggtcgaagggctgggcgacaagctggtggaacaa
ctggtcgacagcggcctgatcaagacgctgcccgatctctacaaacttggtttcaccgcc
ttggccgggctggaacgcatggccgagaagtcggcgaacaacatcgtggcggcgctggaa
aagtccaagcacaccacgctgccccgcttcctcttcggcctgggcatccgccacgtgggc
gaagccaccgccaaagacctggcgcgccatttcggcaacctggatcgtgtcatggccgcc
agcgtggacgagctgctgcaagtcaacgacgtcggcccggtggtggcccagagcatccac
accttcttcgagcagccgcacaaccgcgaggtggtggcccagctgcgcgcggccggcgtg
acctggtcggagaacgaaggcgagcagaacacgccgcaacccttgctgggcaagaccttc
gtgctcaccggcaccttcccgaccttgacccgcgaccaggccaaggacttgctcgaagcg
gctggcgccaaggtggcgggctcggtgagcaagaagaccgactacgtggtggccggcgcg
gaagctggcagcaagctggacaaggcgcagacgctgggcgtggcggtgatcgacgaggcg
gcgatgctcgacatgctccaaccacccgcaggcggttga
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