Hymenobacter psoromatis: A0257_05015
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Entry
A0257_05015 CDS
T04376
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03030
DNA replication
hyp03410
Base excision repair
hyp03420
Nucleotide excision repair
hyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A0257_05015
03410 Base excision repair
A0257_05015
03420 Nucleotide excision repair
A0257_05015
03430 Mismatch repair
A0257_05015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyp03032
]
A0257_05015
03400 DNA repair and recombination proteins [BR:
hyp03400
]
A0257_05015
Enzymes [BR:
hyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A0257_05015
DNA replication proteins [BR:
hyp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A0257_05015
DNA repair and recombination proteins [BR:
hyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A0257_05015
NER (nucleotide excision repair)
GGR (global genome repair) factors
A0257_05015
MMR (mismatch excision repair)
DNA ligase
A0257_05015
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A0257_05015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
ABC_tran_CTD
Motif
Other DBs
NCBI-ProteinID:
AMR26532
LinkDB
All DBs
Position
1180041..1182056
Genome browser
AA seq
671 aa
AA seq
DB search
MNPQARIQALAQRLHHLNQQYYQHDISEVSDQEFDQLLTELNQLEQAHPDLAQPNSPTQR
VGGTVTKQFAQATHRYPMLSLGNTYSEDDLREFDERVQKGLEGAPYSYVCEQKFDGVAMS
LAYEGGNLHQGVTRGDGTRGDVVTANVRTIRTLPLHLAGNFPAEAEVRGEVFMPNQVFND
LNQEREQNGEALLANPRNAASGALKLQDSSQVAARRLRFYAYSVLTPGRHFASHSESLEA
ATAWGLPVSPTWRRCANLQEVLDYIHEWEQKRFTLPVNTDGIVIKVDNLRQQDQLGLTAK
SPRWAIAYKYPTAAARTRLREIIYNVGRTGAVTPVALLDPVALAGTVVKRATLHNANQIA
ALDLRLGDLVFVEKGGEIIPKITGVDLSARPIHAVPIEYPLACPACGTILERPEDEVHFR
CPNERGCPPQLKARLEHFVSRKALNIDGLGAETVGRLFDSALIQTPADIYDLVMRKGELI
RVERLGEKSIDNMLAGIEQSKQVPFSRVLFGLGIRYVGETVAQKLADYYRNIDTLMDAAK
AGAISTVPEVGGVIAVAAMHWFEQPYNLEQIERLRASGVQLAASGEPPLAASDRLAGLTF
VLSGVFENYSREQLQTLITSNGGKITGSISKKLSYLVAGDNMGPAKREKAVGFKVPIISE
NELLALLPVSE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgcaagcccgcattcaggccctcgcccagcgcctgcaccacctcaaccagcag
tattaccagcacgacatttcggaggtgtcggaccaggagtttgaccagctgctgaccgag
ctgaatcagctggagcaggcccaccccgacctggcccagcccaactcgcccacccagcgc
gtgggcggcaccgtcaccaagcagtttgcgcaggccacgcatcgctaccccatgctgagc
ctgggcaatacgtattcggaagacgacctgcgcgagtttgatgaacgcgtgcaaaagggc
ctcgaaggcgcgccttattcgtatgtgtgcgagcaaaagttcgacggcgtggccatgagc
ctggcttatgagggcggcaacctgcaccagggcgtgacgcgcggcgacggcacccgcggc
gacgtggtgacggccaacgtgcgcaccattcgcaccctacccctgcatttggccggcaac
ttcccggccgaggcggaagtgcgtggcgaggtgttcatgccgaatcaggttttcaacgac
ctcaaccaggagcgcgagcaaaacggcgaagccctgctggccaacccgcgcaacgccgcc
agcggcgcgctcaagctccaggattccagccaggtagcggcgcggcggctgcggttttat
gcgtattcggtgctcacgccgggccggcatttcgccagccacagcgaaagcttggaagcc
gccacggcctggggcctgccggtgtcgcccacctggcggcgctgcgccaatttgcaggaa
gtgctcgactacatccacgagtgggagcagaagcgctttacgctgcccgtgaacacggat
ggcattgtgattaaggtcgataatctgcgccaacaggaccagctgggcctcaccgccaaa
agcccgcgctgggccattgcctacaaatacccaacggcggcggcccgcacccggctgcgc
gaaatcatctacaacgtgggccgcaccggcgccgtgacgcccgtggccctgctcgacccc
gtggcgctggccggcaccgtagtaaaacgcgccactctgcacaatgccaatcagatagcg
gcgctcgacctgcgcctcggcgacctggtgttcgtggagaaaggcggcgaaatcatcccc
aaaattacgggcgtggatttatcggcccgaccaattcatgcggtacctattgagtatccg
cttgcttgcccagcttgtggtacaatattagaacgtcccgaggatgaggttcacttccgc
tgccctaatgaacgcggttgcccacctcagcttaaggcacggctagaacattttgtgagc
cgtaaagcgctgaatatagatggcttgggagctgaaaccgtaggacggctatttgattca
gcactgatacagacccccgctgatatctacgacctagtaatgcgtaagggggaattaata
agagtagagcggttaggcgaaaaatctattgataatatgctagccggcattgaacaaagt
aaacaggtccctttttcgagagtgttatttggcttaggtatacgttatgtaggcgaaacc
gtagctcaaaagcttgccgactattaccgcaatattgatacgctcatggatgctgccaaa
gcaggggcaatatccactgtaccagaggtaggaggcgttattgcagtggctgctatgcac
tggtttgagcaaccttataatctagaacaaatagaacgtctacgggcttccggcgtgcaa
ctcgcagccagcggcgagccgccgctggccgccagcgaccgcctggccggcctcaccttc
gtgctctcgggcgtgtttgaaaattacagccgcgagcagctgcaaaccctcatcacctcc
aacggcggcaaaatcacgggctccatttccaagaagctgagctacttagtggctggcgac
aacatggggccggccaagcgcgagaaggcagttggctttaaggtgccgattatctcggag
aatgagctgctggcgctgctgccggtgagcgaatag
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integrated database retrieval system
