Hymenobacter latericius: OIS50_06020
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Entry
OIS50_06020 CDS
T11505
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyq Hymenobacter latericius
Pathway
hyq03030
DNA replication
hyq03410
Base excision repair
hyq03420
Nucleotide excision repair
hyq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OIS50_06020 (ligA)
03410 Base excision repair
OIS50_06020 (ligA)
03420 Nucleotide excision repair
OIS50_06020 (ligA)
03430 Mismatch repair
OIS50_06020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyq03032
]
OIS50_06020 (ligA)
03400 DNA repair and recombination proteins [BR:
hyq03400
]
OIS50_06020 (ligA)
Enzymes [BR:
hyq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OIS50_06020 (ligA)
DNA replication proteins [BR:
hyq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OIS50_06020 (ligA)
DNA repair and recombination proteins [BR:
hyq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OIS50_06020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OIS50_06020 (ligA)
MMR (mismatch excision repair)
DNA ligase
OIS50_06020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OIS50_06020 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
YfjT_2
Zn_ribbon_NUD
HHH
Zn_Ribbon_TF
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UYZ60353
LinkDB
All DBs
Position
1:1350196..1352229
Genome browser
AA seq
677 aa
AA seq
DB search
MTDLFAVQEKIRALTERLHYLNYQYYQNDVSEVPDQEFDHMLHELQQLEKQYPEYAQPNS
PTQRVGGTITKQFPTQEHRYPMLSLANTYSEADLREFDERVQRGLEGAEYQYVCELKFDG
VAMSLTYENGQLTRGVTRGDGTRGDVVTNNVRTIKTLPLHLRPTPDQPQDFEVRGEVFMP
LTVFNDLNAEREQNGEPLLANPRNAASGTLKLQDSAQVAARRLRFYAYAFLSSRRDFPTH
SAALEALKRWGLPVSDTWRLCGSIDEVLAFIHHWEKRRFELPVATDGIVIKVDDLRQQEL
LGFTAKSPRWAIAYKYPAEAARTRLNEISYQVGRTGAVTPVALLTPVPLAGTVVKRASVH
NANQIAALDLRIGDMVFVEKGGEIIPKITGVDLLARPADAQPIVYPTTCPACGTPLVRPE
GEAHYRCPNERGCAPQLKSKLEHYVSRKALNIDGLGAETVGRFFDLGLVRTAADLYDLPQ
RRDELVNLDRLGEKSVQRMYAGLEASKEVPFDRVLFGLGIRYVGETVAEKLAAHYRTIDA
ILGASAAELAAVPEVGGVIADSVALWAHDPANRELVERLKAAGVQMQLTGEAPQPLSDRL
NGLTFVLSGVFEQHTREELEQIIERNGGKLSSSISKKLSYLVAGDKMGPAKREKATALKV
PIIGETDLLAMVSDGGL
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctgttcgccgttcaggagaaaatccgcgctcttaccgagcgcctgcactac
ctcaactaccagtactaccaaaacgacgtgtcggaggtgccggaccaggagttcgaccac
atgctgcacgagctgcagcagctggagaagcaataccccgagtacgcgcagcccaactcg
cccacccagcgcgtgggcggcaccatcaccaagcagtttcccacgcaggagcaccgctac
cccatgctctcgctggccaacacctattcggaggccgatttgcgggaatttgatgagcgc
gtgcagcgcggactggagggcgccgaataccagtacgtgtgcgagctgaagttcgacggc
gtggccatgagcctgacctacgaaaacggccagctgacgcgcggcgtaacccgcggcgac
ggcacccgcggcgacgtggtaaccaacaacgtgcgcaccatcaaaacgctgccgctgcac
ctgcgccccacgcccgatcagccccaggattttgaagtgcgcggcgaggtattcatgccc
ctcacggtgttcaacgacctgaacgccgagcgcgagcaaaacggcgagccgctgctggcc
aacccgcgcaacgccgcctcgggcaccctcaagctgcaggactcggcccaggtggccgcc
cgccggttgcgcttctatgcttatgctttcctgagctcgcgccgcgactttccgacccac
agcgccgccctggaggccctcaagcgctggggcctgcccgtatcggacacgtggcggctg
tgcggcagcatcgacgaggtgctggcgttcattcatcattgggagaaacgccgcttcgag
ctgcccgtggccaccgacggcatcgtgattaaagtggacgacctgcgccagcaggagcta
ctcggcttcacggccaaaagccctaggtgggccattgcctacaagtacccggccgaggcc
gcccgcacccgcctcaacgaaatcagctaccaggtgggccgtacgggcgccgttacgccg
gtggccttgctgacgccggtacccctggccggcaccgtggtaaagcgcgcctcggtgcac
aacgccaaccagattgccgccctcgacctgcgcatcggcgacatggttttcgtggaaaaa
ggcggcgagattatcccgaaaattaccggcgtcgatttgctcgcgcgccccgccgatgcc
caacccattgtgtaccccaccacttgcccggcttgcggcaccccgctggtgcggcccgag
ggcgaggcccactaccgctgccccaacgagcgcggctgcgcgccgcagctcaagagcaag
ctcgagcactatgtgtcgcgcaaggccctgaacatcgacgggttgggtgccgaaaccgtg
ggccgctttttcgacctagggctggtgcgcaccgccgccgacctctacgacctgccccag
cgccgcgacgagctggtgaacctcgaccgcctgggcgagaaatcggtgcagcgcatgtat
gccggcctcgaagccagcaaggaagtgcccttcgaccgggtgctcttcggcctgggtatc
cgctacgtgggcgaaaccgtggccgaaaaactggccgcgcactaccgcaccatcgacgcc
atcctgggtgcctcggccgccgaactagccgccgtgcccgaggtgggtggcgtaattgcc
gacagcgtggcgctgtgggcgcacgaccccgccaaccgcgagctggtagagcgcctgaaa
gccgccggggtgcaaatgcagcttaccggcgaggcaccgcagcccctcagcgaccggctc
aacggcctcacgttcgtgttgtcgggcgtgtttgagcagcacacgcgcgaggagctggag
caaatcattgagcgcaacggcggcaagctcagctcctccatcagcaaaaagctcagctac
cttgtggccggcgacaaaatgggcccggccaagcgcgaaaaagccacggcccttaaggtg
cccatcattggcgaaaccgatttgctcgctatggtttcggacggcgggctttaa
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