KEGG   Hydrogenobaculum sp. SN: HydSN_0913
Entry
HydSN_0913        CDS       T02516                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hys  Hydrogenobaculum sp. SN
Pathway
hys03030  DNA replication
hys03410  Base excision repair
hys03420  Nucleotide excision repair
hys03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hys00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HydSN_0913
   03410 Base excision repair
    HydSN_0913
   03420 Nucleotide excision repair
    HydSN_0913
   03430 Mismatch repair
    HydSN_0913
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hys03032]
    HydSN_0913
   03400 DNA repair and recombination proteins [BR:hys03400]
    HydSN_0913
Enzymes [BR:hys01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HydSN_0913
DNA replication proteins [BR:hys03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HydSN_0913
DNA repair and recombination proteins [BR:hys03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HydSN_0913
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HydSN_0913
   MMR (mismatch excision repair)
    DNA ligase
     HydSN_0913
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HydSN_0913
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 Nlig-Ia HHH PTCB-BRCT At2g29880_C Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: AGH93507
LinkDB
Position
826765..828867
AA seq 700 aa
MNDKFFIDKTKEILKTYNLSPDKHPPKLSKEEAIKIIDTLRELINYHDYRYYVLNQPVIS
DAEYDAIYKFLKSIEDTYPDLITPDSPTQRVSSDISSTFPQVKHLAPMLSLDNTYNEDDL
RDFDRRVKELSGKEHIEYCVEPKYDGAGISLLYENDIFVRGATRGDGEVGEEITKNLKTI
KTIPLRANFSKQGIRLLEIRGEVIINKDDFKKINEERMAENLPPYANPRNLAAGSIRLQD
PQEVAKRPLTALVYQITYVEPANAMPKTHYEAIKMLHDLGFKTPFLDMKLCKNIQEVIDY
CKYFESKRESLPYEIDGMVIKVNDISLYDELGFTSHAPRWATAFKFKAKQATTVILDVIF
SVGRVGNITPVAKLEPVSLGGVTISSVSLFNEDFIREKDIHIKDTVIIERAGEVIPYVVS
VVKEARPKDAKPIVFPEYCPSCGSKLVKAPGEVAWRCINISCPAQVVLRIRHFASKDAMD
IKGLGEAVAQLLYDAKLVKNIADIYYLKFSDLVRLPRFAKKSAQNLIDAIEASKRRGLAR
VLYGLGIRYVGLTTAKKLASYYKDIWSIAKAKEEDLRNIEDIGDIVARSIKEFFSLEQNI
NTIKRLEEAGVLLKEVSEAVSNKLAGLQFVFTGTLSCCTREIAKQMVESLGATTSDSVTH
HTSYLVVGQDPGATKLRKANMLGIKTISEEEFLKLLEDNK
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgaatgacaaattctttatagacaaaacaaaagagattttaaaaacttataacctttct
ccagacaaacatccacctaaactttccaaagaagaagccataaaaataatagacacgtta
agagaactcataaattatcatgattatagatattatgtgttaaatcaacccgttatatca
gatgccgagtacgatgctatttataaatttcttaaaagcatagaagacacttatcctgat
ctcataactccagattcacctactcaaagagtatcttccgatatatcaagcacatttcct
caagtaaagcacttagctccgatgctttctttggacaacacttacaacgaagatgacttg
agagattttgatagaagagtaaaagaattaagcggaaaagaacatatagaatactgtgtt
gaaccaaaatacgacggagctggtatatcgcttttatacgaaaacgatatatttgtaaga
ggagccaccagaggagacggggaagtgggtgaggagattaccaaaaacctaaaaactatc
aagacaatccctctaagggcaaatttttcaaaacaaggtattaggcttttagaaataaga
ggagaagtcataataaacaaagatgactttaaaaaaataaacgaagagaggatggcagaa
aacttacccccttacgcaaatccaagaaacttagcggctggctctataagacttcaagac
ccccaagaagtagccaaaagacctctaacagcccttgtctaccaaataacatacgtagaa
cctgcaaacgctatgccaaaaactcactacgaagctataaaaatgcttcatgatcttggt
tttaaaacgccttttttagacatgaaactttgtaaaaatatccaagaggtcatagattac
tgtaaatactttgaatcaaaaagagaatcactaccttatgaaatagatggaatggtgata
aaagtaaacgatatatcactttatgatgagcttggatttacatcgcatgctccaagatgg
gccactgcttttaaatttaaagcaaaacaagccactaccgtgatattagatgtgatattt
agcgttggaagagtaggcaatataacaccagtggcaaaattagaaccagtatctttgggc
ggggttaccatatcaagcgtttctttattcaacgaagattttataagagaaaaagatata
cacataaaagatacggttatcatagaaagggctggtgaggtgataccttatgtggttagc
gtggtaaaagaagcaaggcccaaagatgccaagccaatcgtttttccagagtactgccca
tcttgtggttctaagcttgtaaaagcccccggcgaagtggcttggaggtgtataaatata
tcctgcccagctcaagtggtgttaagaataaggcattttgcatcaaaagatgcaatggat
ataaaaggtttaggggaagctgtggctcagcttttatacgatgctaaacttgtgaaaaac
atagccgatatctactaccttaaattttcagatttggtaaggcttccaaggtttgccaaa
aaatcagctcagaatcttatagatgccatagaagcttcaaaaagaagaggcctagcaagg
gtgttatatggtcttggcataagatacgtagggcttaccactgcaaaaaaacttgcttca
tattacaaggatatatggagtatagcaaaagccaaagaagaagacttaagaaatatagaa
gatataggggatatagttgcaagaagtataaaagagttttttagtttggagcaaaatata
aatacgataaaaaggttagaagaagctggtgtacttttaaaagaagtatctgaagccgta
tctaacaagcttgccggtttgcaatttgtttttacaggtacactttcttgttgtaccaga
gaaatagccaagcaaatggtagaatcccttggggccaccacatcagacagtgtaactcat
catacgtcttatcttgtggtaggacaagatccaggtgctaccaaactaagaaaagcaaac
atgctaggtatcaaaactataagcgaagaggagtttttaaagcttttagaagataacaag
taa

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