Hymenobacter weizhouensis: OIS53_05120
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Entry
OIS53_05120 CDS
T11506
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyu Hymenobacter weizhouensis
Pathway
hyu03030
DNA replication
hyu03410
Base excision repair
hyu03420
Nucleotide excision repair
hyu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OIS53_05120 (ligA)
03410 Base excision repair
OIS53_05120 (ligA)
03420 Nucleotide excision repair
OIS53_05120 (ligA)
03430 Mismatch repair
OIS53_05120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyu03032
]
OIS53_05120 (ligA)
03400 DNA repair and recombination proteins [BR:
hyu03400
]
OIS53_05120 (ligA)
Enzymes [BR:
hyu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OIS53_05120 (ligA)
DNA replication proteins [BR:
hyu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OIS53_05120 (ligA)
DNA repair and recombination proteins [BR:
hyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OIS53_05120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OIS53_05120 (ligA)
MMR (mismatch excision repair)
DNA ligase
OIS53_05120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OIS53_05120 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
Zn_ribbon_FGT1_2
YfjT_2
Motif
Other DBs
NCBI-ProteinID:
UYZ64229
LinkDB
All DBs
Position
1246419..1248611
Genome browser
AA seq
730 aa
AA seq
DB search
MSETDVQARILALTERLHHLNYQYYQRDISEVSDQEFDQLLAELARLEQQYPQFAQPNSP
TQRVGGTITKQFPTAEHRYPMLSLGNTYSEADLREFDERVRRGLEGADYTYVCELKFDGV
AMSLTYQDGQLTQGVTRGDGTRGDVVTSNVRTIKNLPLHLRREGPPQPPEFEVRGEVFMP
LPVFAELNQEREANGEALLANPRNAASGALKLQDSALVAARRLRFYAYAFLMPGRNQFAT
HSESLEALAAWGLPVSDTWRRCHSLAEVLDFVHEWDKKRFTLPVATDGIVIKLDDFRQQE
VLGYTAKSPRWAIAYKYPAEAARTRLREVEYNVGRTGAVTPVALLDPVPLAGTVVKRASV
HNANQIAALDLRLGDLVFVEKGGEIIPKITGVDVAARPADAAPIVYPTACPSCGTPLIRP
AGEAHFRCPNDRGCPPQRKARLEHFVSRKAMNIDGLGAETVGRFFDLGLVSDAASLYDLP
AKAAELAQLERLGEKSVQRLVAGLEASKQVPFDRVLFALGIRYVGETVAEKLAAHYRTID
ALLAASATELAAVPEVGGVIAESAAAWFQESDNRAMVERLRAAGVQLALTGEAPQAVSNR
LEGLTFVLSGVFELHSRDELQALIQAHGGKVTGSISKKLSYLVAGDKMGPAKREKATELK
VPIITEADLLAMLPTDTEAAETPEEADSAALPASAASAAIGSTDGPVAASAVAPPLPGPK
AGTGQQGLLF
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaccgacgttcaagcccgcatcctggccctcactgagcgcctgcaccacctc
aactaccagtattaccagcgcgacatctcggaggtgtcggaccaggagttcgaccagttg
ctggccgagctggcccggctggagcagcagtacccgcagtttgctcagcccaactctcct
acccagcgcgtgggcggcaccatcaccaagcagtttcccacggccgagcaccgctacccc
atgctcagcctgggcaacacttactccgaagccgacctgcgcgagtttgacgagcgggtg
cgccgcggcctggagggcgccgactacacctacgtctgcgagctgaagtttgacggcgtg
gccatgagcctgacctaccaggacggccagcttacccagggcgtaacgcgcggcgacggt
acccgcggcgacgtggtaaccagcaacgtacgcaccatcaagaacctgcccctgcacctg
cgccgcgaaggcccgccccagcctccggagtttgaggtgcgcggggaggtgttcatgcct
ctgcccgtgtttgcggagctgaaccaggagcgcgaagccaacggcgaggccttgctggcc
aacccgcgcaacgccgccagcggcgccctcaagctccaggattcggccctggtagcggcg
cggcgcctgcgcttctacgcctacgcgtttctgatgcccggccgcaaccagtttgccacc
catagcgagtcgctggaagctctggccgcctggggcctgcccgtgtccgacacctggcgg
cgctgccactccctggccgaggtgctggacttcgtgcacgagtgggacaagaagcgcttc
accctgcccgtggccaccgacggcatcgtaattaagctcgacgacttccgccagcaggag
gtgctgggctacacggccaaaagtccgcgttgggccattgcctacaagtacccggccgag
gcggcccgcacccgcctgcgtgaggtggagtacaacgtgggccgcaccggggccgtgacg
cccgtggccctgctcgaccccgtgcccctggccggcaccgtggtcaagcgcgcctccgtg
cacaatgccaaccagattgccgccctcgacctgcgcctgggcgacctggtgtttgtggag
aaaggcggggaaatcattcccaagattaccggcgtagacgtggccgcccgcccggccgat
gccgcgcccatcgtgtaccccaccgcctgcccctcctgcggcacgcccctaatccggccg
gccggcgaggcgcatttccgctgccccaacgaccggggctgcccgccccagcgcaaggct
cgcctggagcactttgtgtcgcgcaaggccatgaacatcgacggcctgggcgccgaaacc
gtgggccgcttcttcgacctgggccttgtttcggacgcggcttccctgtacgacctgccg
gccaaagccgccgagctggcccagctggagcgcctgggcgagaagtcggtgcagcgcctg
gtggcgggcctggaagccagcaagcaggtgccgtttgatagggtgctgtttgccctgggt
atccggtacgtgggcgagacggtggccgagaagctggccgcccactaccgcaccatcgac
gccctactggccgcctcggctaccgagctggctgccgtgcccgaggtgggcggcgtcatt
gccgagtcggcggcggcctggtttcaggagtccgacaaccgcgccatggtggagcggctg
cgggccgccggcgtgcagctggcccttaccggcgaggccccgcaggccgtcagcaaccgc
cttgagggtctgaccttcgtgctgtccggcgtgtttgagctgcactcccgcgacgagctg
caagccctgattcaggcccacggcggcaaggtgacgggctccatcagcaagaagctcagc
tacctggtggccggcgacaaaatgggccccgccaagcgcgaaaaagccaccgagctaaag
gtgcccatcatcacggaagctgacctgctggccatgctgcccaccgacaccgaagctgcc
gaaacacccgaggaagcggattctgctgcgttgccggccagtgcagctagtgccgcaatc
ggctctactgatggtccggtagcagcctccgctgtggccccgccactgcccggcccgaag
gctggcacaggtcagcaaggtttgctattttag
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