Hydrogenophaga sp. YM1: JNX00_12885
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Entry
JNX00_12885 CDS
T10285
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy03030
DNA replication
hyy03410
Base excision repair
hyy03420
Nucleotide excision repair
hyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNX00_12885 (ligA)
03410 Base excision repair
JNX00_12885 (ligA)
03420 Nucleotide excision repair
JNX00_12885 (ligA)
03430 Mismatch repair
JNX00_12885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyy03032
]
JNX00_12885 (ligA)
03400 DNA repair and recombination proteins [BR:
hyy03400
]
JNX00_12885 (ligA)
Enzymes [BR:
hyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JNX00_12885 (ligA)
DNA replication proteins [BR:
hyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JNX00_12885 (ligA)
DNA repair and recombination proteins [BR:
hyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JNX00_12885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNX00_12885 (ligA)
MMR (mismatch excision repair)
DNA ligase
JNX00_12885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JNX00_12885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF2116
Motif
Other DBs
NCBI-ProteinID:
QRR32576
LinkDB
All DBs
Position
complement(2748839..2750938)
Genome browser
AA seq
699 aa
AA seq
DB search
MTADMFAEPTPPASAAERAAELRALLHHHAHLYYTLDAPKIPDAEYDRLFQELQAIEARH
PELLTPDSPTQRVGGAVLKELAPVRHAVPMLSIRTETDTEASGAAAFDARVRRELGLAES
DPPVEYLAELKFDGLAMSLRYERGVLVRAATRGDGETGEDVTHNVRTIKQIPLKLPDGVP
EVLEVRGEVYMRRDQFEALNERQREKIAQGAKGEKTFVNPRNAAAGAVRQLDSRIARERP
LSFFAYSWGEVLGDPHPPASQYDWLMRLKAWGFPVAEQTAVCRGADELVAFHRRIGERRD
ALPYDIDGVVYKVNSLETQKRLGFVTREPRWAVAHKYPAQEQLTTVHAIDVQVGRTGKLT
PVAKLAPVFVGGVTVTNATLHNEMEARRKDVRVGDTVIVRRAGDVIPEVVSVLVDKRVGD
PPPFTMPSHCPVCGSAAVREEGEADHRCTGGLFCAAQRKQAILHYAQRRAVDIEGLGDKL
VEQLVDSGLIKTLPDLYKLGLTALAGLERMAEKSAQNVLDALNKRRETTLPRLLFGLGIR
HVGEATAKDLARHFGGLDRIMDASVDELLQVNDVGPVVAQSIRTFFEQPHNREVVEQLRA
AGVHWPENEGEHNTPQPLLGKTFVLTGSFPTLKREDAKALLEAAGAKVAGSVSKKTDYVV
AGEEAGSKLDKARELGVAVIDEAAMLALLATPAQDPPTA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgatatgtttgccgagccgacgccccccgcgtcggccgccgagcgcgccgcc
gagttgcgcgcgctgctgcaccaccacgcccacctgtactacacgctggacgcgccgaag
atccccgacgccgagtacgaccgcctgttccaggaactgcaggcgatcgaggcgcggcac
cccgaactgctgacacccgactcgcccacgcagcgggtgggcggcgccgtgctgaaggaa
ctggcgcccgtgcgccacgcggtgcccatgctcagcatccgcaccgagaccgacaccgag
gccagcggcgccgccgccttcgacgcgcgcgtgcgccgcgagctgggcctggccgagtcc
gacccgccggtggagtacctggccgaactcaagttcgatggcctggccatgagcctgcgc
tacgagcgcggcgtgctggtgcgcgccgccacgcgcggcgacggcgagaccggcgaggac
gtgacgcacaacgtgcgcaccatcaagcagattcccttgaagcttcccgacggcgtgccc
gaggtgctcgaggtgcgcggcgaggtctacatgcgccgcgaccagttcgaggccctgaac
gagcgccagcgcgagaagatcgcccagggcgccaagggcgaaaagaccttcgtgaacccg
cgcaacgccgccgccggggccgtgcgccagctcgactcgcgcatcgcgcgcgagcggccc
ctgagcttcttcgcctactcctggggcgaggtgctcggcgatccgcacccgcccgccagc
cagtacgactggctcatgcgcctgaaggcctggggcttccccgtggccgagcagacggcc
gtgtgccgcggcgccgacgagctggtggccttccaccgccgcatcggcgagcggcgcgac
gcgctgccctacgacatcgatggcgtggtctacaaggtcaacagcctggagacgcagaag
cgcctgggcttcgtcacccgcgagccgcgctgggccgtggcgcacaagtacccggcgcag
gagcagctcaccacggtgcacgccatcgacgtgcaggtgggccgcaccggcaagctgacg
cccgtggccaagctcgcgccggtgttcgtgggcggcgtcaccgtcaccaacgccaccctg
cacaacgagatggaggcgcgccgcaaggacgtgcgcgtgggcgacacggtcatcgtgcgc
cgcgcgggcgacgtcattcccgaggtggtctcggtgctggtggacaagcgcgtcggcgac
ccgccgccgttcaccatgcccagccattgcccggtgtgcggcagcgccgccgtgcgcgag
gaaggcgaggccgaccaccgctgcaccggcggcctgttctgcgccgcccagcgcaagcag
gccatcctgcactatgcgcagcgccgcgcggtcgacattgagggcctgggcgacaagctg
gtcgagcaactggtggacagcgggctcatcaagaccctgccggacctgtacaagctcggc
ctcaccgcgctcgcgggcctggagcgcatggccgaaaaatcggcgcagaacgtgctggac
gccctgaacaagcgccgcgagaccacgctgccgcgcctgctcttcggcctgggcatccgc
cacgtgggcgaggccacggccaaggacctcgcgcgccacttcggcgggctggaccgcatc
atggacgccagcgtggacgagctgctgcaggtcaacgacgtgggcccggtcgtggcgcag
agcatccgcaccttcttcgagcagccgcacaaccgcgaggtggtggaacagctgcgcgcg
gccggcgtgcactggcccgagaacgagggcgagcacaacaccccgcagcccctgctgggc
aaaaccttcgtgctcacgggcagtttccccacgctcaagcgcgaggacgccaaggccctg
ctcgaggcggccggcgccaaggtggccggctcggtgagcaagaagaccgactacgtggtg
gccggcgaggaggccggcagcaagctggacaaggcccgcgagctgggcgtggcggtgatc
gacgaggcggcgatgctggcactgctggccacgccggcacaggacccgcctacggcttga
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