Hymenobacter sp. PAMC 26628: AXW84_10530
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Entry
AXW84_10530 CDS
T04961
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hyz
Hymenobacter sp. PAMC 26628
Pathway
hyz03030
DNA replication
hyz03410
Base excision repair
hyz03420
Nucleotide excision repair
hyz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AXW84_10530
03410 Base excision repair
AXW84_10530
03420 Nucleotide excision repair
AXW84_10530
03430 Mismatch repair
AXW84_10530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyz03032
]
AXW84_10530
03400 DNA repair and recombination proteins [BR:
hyz03400
]
AXW84_10530
Enzymes [BR:
hyz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AXW84_10530
DNA replication proteins [BR:
hyz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AXW84_10530
DNA repair and recombination proteins [BR:
hyz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AXW84_10530
NER (nucleotide excision repair)
GGR (global genome repair) factors
AXW84_10530
MMR (mismatch excision repair)
DNA ligase
AXW84_10530
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXW84_10530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Auto_anti-p27
Zn_ribbon_FGT1_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AMJ65816
LinkDB
All DBs
Position
complement(2410418..2412499)
Genome browser
AA seq
693 aa
AA seq
DB search
MSDAIQIQMQALTERLHHLNYQYYQRDTSEVSDQEFDQLLAELQALEVAYPALALPNSPT
QRVGGTVTKQFATSTHRFPMLSLGNTYSEDDLREFDERVQKGLEGAPYRYVCELKFDGVA
MSLAYQNGELHQGVTRGDGTRGDVVTANVRTIRTLPLHLRPAPGQPTDFEVRGEIFMPLS
VFAELNAEREQNGEALLANPRNAASGTLKLQDSAQVAARKLRFFAYSLLTPGRHFASHSE
ALGALAAYGLPVSDTWRVCASLNEVLNFIHQWEKQRFTLPVATDGIVIKVDDLRQQDQLG
LTAKSPRWAIAYKYPAEAARTQLREVQYNVGRTGAVTPVALLAPVPLAGTVVKRATLHNA
NQIAALDLRLGDTVLVEKGGEIIPKITGVVLDARPAGALPIVYPTACPACGTPLVRPEGE
AHFRCPNERGCPPQLKARLEHYVSRKALNIDGLGAETVCRLFDLGLVNTPADIYDLPARR
AELVTLERLGEKSIDNLIAGIEASKQVPFPRVLFGLGIRYVGETVAQKLAQHYRDIDALT
AATAEEMAAVPEVGGVIAVAAAAWLQEPQNRELLERLRQAGVQLALTGEAPVPASARLVG
LTFVLSGVFAEHSRDELQHIIVSNGGKITGSISKKLSYLVAGENMGPAKREKATGFKVPI
ISEADLMALLPAAGEAAEAPEVPADGAPGELFG
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgccattcagatccagatgcaggccctcaccgagcggctccaccacctcaac
taccaatactaccagcgcgatacgtccgaagtgtcggaccaggagtttgatcagctgctg
gccgaattgcaggcgctggaagtcgcgtaccccgcgctggccctacccaactcgccgacc
cagcgcgtgggcggcaccgtcacgaagcagtttgccacgtccacacaccgcttccctatg
ctcagcctgggcaacacgtattcggaagacgacctgcgcgagttcgacgagcgggtgcag
aagggcctggaaggggccccgtaccgctacgtgtgcgagctgaaatttgacggcgtggcc
atgagcctggcctaccaaaacggcgagctgcaccagggcgtgacgcgcggcgacggcacc
cgcggcgacgtggtgacggccaacgtgcgcaccattcgcacgctgccgctgcacctgcgc
ccggcccccggccagcccaccgactttgaggtgcgcggcgaaatattcatgcccctgtcc
gtgtttgccgagctgaacgccgagcgcgagcagaacggcgaggccctgctggccaacccc
cgcaacgccgccagcggcaccctcaagctgcaagattcggcccaagtagcggcccgcaag
ctgcggttttttgcctactcgctgctcacgccgggccgccacttcgcctcgcacagcgag
gcgctgggggccctggctgcctacggcctgccggtatcggacacgtggcgggtgtgtgcg
tcattaaatgaggtactgaattttatccaccagtgggagaagcagcgctttaccctaccg
gtggccacggacggtatcgtgattaaggtcgacgacctgcgccagcaggaccagctgggc
ctcacggccaagagcccgcgctgggccattgcctacaagtacccggccgaagcggcccgc
acccagttgcgcgaggtgcagtacaacgtgggccgcaccggcgccgtgacgcccgtggcc
ctgctggcccccgtacccctggccggcaccgtcgtcaagcgcgccacgctgcacaacgcc
aaccagatagccgccctcgacctgcgcctcggcgacacggtgctggtggagaagggcggc
gaaatcatccccaaaatcaccggcgtggtgctcgacgcccggcccgctggggccctgccc
atcgtgtaccccaccgcgtgcccggcctgcggcacgccgctggtgcggcccgagggcgag
gcccacttccgctgccccaacgagcgcggctgcccgccccagctcaaggcccggctggag
cactacgtgagccgcaaggcgctgaacatcgacgggttgggcgccgaaacggtgtgccgc
ctcttcgatttgggattagtgaacacgcccgccgacatctacgacctgcccgcgcgccgc
gccgagctggtgacgctggagcggctgggcgagaagtccatcgacaacctcatcgccggc
atcgaggccagcaagcaagtgccatttccgcgggtattgttcggcctgggcatccgctac
gtgggcgaaaccgtggcccagaaactggcccagcactaccgcgacatcgacgccctaacc
gccgccacggccgaagaaatggccgccgtgcccgaagtgggcggcgtgattgccgtggcc
gccgccgcttggctgcaagagccccaaaaccgcgaattgctggagcgcctgcgccaagcc
ggcgtgcagctagcccttaccggcgaggcccccgtgccggcatccgcccgcctggtgggc
ctcacgttcgtgctctcgggcgtgtttgccgaacacagccgcgacgagctgcaacacatt
atcgtttcgaacggcggcaaaatcactggctccatctccaagaagctcagctacttggtg
gccggtgaaaacatgggccctgctaagcgcgaaaaagccacgggcttcaaagtgcccatc
atctccgaagccgacctaatggccctgctgcccgccgccggcgaagccgcagaggccccg
gaagtgccagccgacggggctccgggcgagctttttgggtag
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