Helicoverpa zea (corn earworm): 124634102
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Entry
124634102 CDS
T08400
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124634102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hze03400
]
124634102
Enzymes [BR:
hze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124634102
DNA repair and recombination proteins [BR:
hze03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124634102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
SecDF_P1_head
Motif
Other DBs
NCBI-GeneID:
124634102
NCBI-ProteinID:
XP_047025477
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All DBs
Position
1:11173173..11183652
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AA seq
895 aa
AA seq
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MANEVTPANEIKFEKLCNLLEQLHKRKKQRQEQDKILGAFINEFKMTASQIVGQKNPSIF
PILRLLLPKLDRERNAYNLKENKLGVLLVKVLSLSKQSRDAQKLLNYRSVSNSTDSDFAG
VAYFVFKSRLSPKSDGFTVGDINEILDKIASAEVGKKASILDDMFSHVINKVTADQLKWF
LRIILKDLKLEIGSNRILGLFHPDAPEYFETCGLLSKVCEELGDGDARPLELGIQMFLAI
SPMLSERLDVKHIARQLSSDKTYQIENKFDGERFQMHMENGRFEYFSRRGFSFAKNYGSS
YDSGLLTPYLKDCFSSEVSSIILDGEMMGWHKERECFSCKGMAFDVKKITENSKFRPCFC
AFDILYFNGRTLVGPPEKGGLPLSERLRILDKVFVNVPGVIQHSERQIISQRTIFPDILE
ALNKAIENQDEGIVVKDVDSYYIPNKRNAGWYKIKPEYTEGTMSDLDLVIIGAEEAANKR
QGRAKSFLVACSDGGAPGKTPDRWVLVGRVSTGLTFDERESLCAALERHWVSYRQTPAPA
HLYFNKEKPDFWILPEHSIVLTVRASELIRTTGFGADYTLRFPRVTRVRDDKPYQDCMTL
AEFNQLCAHKGPVVKLSTNLINGEQMDEIKPRAKRKTQQPQVAEQFQISSSGDVEATSKA
LLGRKVCILSDDDDCKRPELCKIIESHGGKVVANTGLDTWCCVAGRVTAHVKAVMTARAY
DVLPTSWLRALLPSPAPVHPAPLHMLALSDVTRRKLARHYDVHGDSYTELIDEDTLVKCF
NKMDEDIPIYLTTQEMLNLDKEIFGDNNPHSFLRPCCIHIRNPESIDAIVARMYGATVLD
NTASHCTHIVVPTTIEKNELDNLKKSSNSLIVSEDWLNECFSQKQLVPEEKFVVM
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgaagtaacgccagcaaatgaaataaagtttgaaaagttgtgcaatctctta
gaacaattgcacaagaggaaaaagcaaagacaagagcaagataagatattgggagctttt
ataaacgagtttaaaatgactgcatcacaaatcgtaggtcaaaagaaccccagtattttt
cccatcctaagactgctgttacccaaactggatagagaaaggaatgcatacaatttaaaa
gagaacaaattgggtgttctactggtcaaagttctatcgctgagcaagcagtcacgagat
gctcaaaagctgttgaactacagatccgtcagtaattccacagacagtgacttcgctggc
gtggcctactttgtgtttaagagtagacttagcccaaaatcagacggattcaccgttggt
gatatcaatgaaatcctagataaaattgcttctgctgaagttggaaagaaagcctctatt
cttgatgacatgttcagtcatgtgataaacaaagtgaccgcggatcaattgaagtggttc
ctgaggataattctcaaagacctaaagcttgaaataggaagcaatcgtatattagggctg
tttcatcccgacgctcccgaatattttgaaacatgtggactattgtccaaggtgtgtgaa
gaactaggcgatggagacgctcgtcccctagagctcggaatccagatgttcctagccata
agccccatgctttctgaacgccttgatgtcaaacatatagccagacaactttcgtcggac
aaaacttatcagatagaaaataaatttgatggagagaggtttcagatgcacatggaaaac
gggcggtttgaatacttttcgcgaagagggttttcctttgccaagaattatggaagctcg
tacgactccggattgttgacgccttatctcaaggattgcttttcgtcagaagtgtcaagt
attattctagacggcgaaatgatgggctggcacaaggaacgagagtgttttagctgtaaa
ggaatggctttcgacgttaagaaaataacggagaactcaaagttccgtccatgtttctgt
gcgtttgatatcctgtacttcaatggcaggactctagtggggccgccggagaaaggaggt
ttaccactcagcgaaagacttcgtattttagacaaggtatttgttaacgtccctggagtt
atacagcatagtgaacgccagattatttcgcaaaggacgatatttcctgatatactggaa
gctttgaacaaggccatagagaaccaagatgagggtatagttgtcaaagatgtggattct
tactacattccaaataaacgcaacgctggctggtataaaattaaacctgagtacacagag
ggaactatgagcgaccttgacctcgtcatcatcggtgctgaggaagccgcgaacaagaga
caaggacgcgccaagagcttcctcgtcgcctgctctgatggtggtgctcccggtaaaacg
cctgaccgctgggtattagtaggccgagtatcaacgggcctaacatttgacgagcgtgag
agtttgtgtgccgccctcgaacgtcactgggtctcctacagacagacgcctgccccggct
cacttgtatttcaataaggagaaaccagacttctggatcctacctgaacattccattgtt
ttaacggtccgggcgtctgagctgatcagaaccacgggattcggggcggattatacactt
cgctttccgcgcgtcacgagagtacgagatgataaaccttatcaagactgcatgactttg
gccgaattcaatcaactttgcgcacataaaggaccagtagtcaagttgagcactaatcta
attaatggagagcaaatggacgagataaaaccccgagcgaaacgcaagactcagcagccg
caagtcgccgaacagtttcagatcagctcaagcggagatgttgaagctacgtcaaaagca
ttgctcggaagaaaagtatgcatattgtcggatgatgacgattgtaagagaccggagctt
tgtaagatcattgagtcccacggagggaaggttgtggcgaatacagggttggacacatgg
tgctgcgtggcgggtcgggtcacagctcacgtgaaggcagttatgacggctcgagcatat
gacgtgttgcctacatcctggctgcgggccctcctcccctcccccgcgcccgtgcacccc
gcgcctctccacatgctggcgctcagtgacgtcacgcgacgcaagctcgctcgacactac
gatgtgcacggagacagctatacggagttaatagatgaagacacgctcgtcaagtgtttt
aacaaaatggatgaggatataccgatctacctaacaactcaagagatgctgaacttagat
aaggagatatttggcgataacaacccgcactcgtttctacgcccgtgctgcatacacata
cggaaccctgaaagcattgacgctatagtcgctcgaatgtacggggccacggtacttgac
aatacggcttcacactgcacccatatagttgtacccaccactatagaaaagaacgaactt
gataatcttaaaaagtcatccaatagcttgatagtcagtgaagattggcttaatgaatgc
ttttcgcaaaaacagttagttcctgaagaaaagtttgttgttatgtga
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