Ignavibacterium album: IALB_0373
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Entry
IALB_0373 CDS
T01943
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ial
Ignavibacterium album
Pathway
ial03030
DNA replication
ial03410
Base excision repair
ial03420
Nucleotide excision repair
ial03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ial00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IALB_0373
03410 Base excision repair
IALB_0373
03420 Nucleotide excision repair
IALB_0373
03430 Mismatch repair
IALB_0373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ial03032
]
IALB_0373
03400 DNA repair and recombination proteins [BR:
ial03400
]
IALB_0373
Enzymes [BR:
ial01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IALB_0373
DNA replication proteins [BR:
ial03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IALB_0373
DNA repair and recombination proteins [BR:
ial03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IALB_0373
NER (nucleotide excision repair)
GGR (global genome repair) factors
IALB_0373
MMR (mismatch excision repair)
DNA ligase
IALB_0373
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IALB_0373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_ligase
BRCT_2
DUF2226
RUBY_RBDX
Topo-V_HhH_2_2nd
zf-C3HC4_5
Motif
Other DBs
NCBI-ProteinID:
AFH48085
UniProt:
I0AGH8
LinkDB
All DBs
Position
complement(404626..406656)
Genome browser
AA seq
676 aa
AA seq
DB search
MSESVEKKIQKLREEINKYDYHYYVLAQPLISDEEYDKLYKELEKLEAENPHLITPDSPT
QRIGKDLTKEFKPVNHLIPMLSLANTYDEQDVYDFDRRVREGLPEGEKVEYVVEYKIDGA
SVSLRYIDGKLFTAATRGDGTVGEEITNNVKTIRAVPLKIKKPSGAKYKLNDFEARGEIY
MNIADFEELNRRQAEKGEKLFANPRNSAAGTLKLQNPQIVASRRLNIFLYALFSLEDEFE
SQSENLELLKQMGFRVNPDYRVCKNIEEVLEVCREFESKRNSLEYEIDGAVIKVNSIRQQ
NILGSIAKSPRWAVAYKFKAKQAFTYVRDIVWQVGRTGAVTPVAELEPVKLAGSTISRAT
LHNFDEIKRKDIRVGDKVVIEKGGDVIPKVVAVITEERKKDSKPTKPPEVCPVCKSKLYK
PEDEVALYCENPECPAQIKARLIHFASRGAMDIEGLGEALVDLFVEKGFLNTFSDIYELK
KHRDELIKIERLGEKSVDNLLNAIEKSKSQPFEKVLFALGIRYVGAGVAQKLAEHFGNID
ALIKADEEEILSVYEIGPSISKSLKQFFSDKHNLELIEKLKKAGLRFSSEQKKPVKDNFF
KDKTFVLTGTLSSFSRDEAAVRIKKLGGKVASSVSKNTDYVIAGEKAGSKLDKAKSLGVQ
IMNEDEFLKLLDENKI
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagagtgttgaaaagaaaattcagaagcttcgagaagaaatcaacaaatacgac
tatcactattatgtgctcgcacaaccgttgataagcgatgaagaatatgacaaactatat
aaagaacttgaaaaactcgaagcagaaaatcctcatttaataacaccggattcaccaaca
cagagaattggaaaagatttaacaaaagaatttaaacctgtaaatcatcttattcctatg
ttaagtctggcaaatacttatgatgaacaggatgtctatgattttgacagaagagttcgt
gaaggtttgcccgaaggagaaaaagttgaatatgttgttgaatataaaattgatggtgca
tctgtcagcttaagatatattgacggaaaactttttactgccgcaacacgaggcgatgga
acagttggcgaagagattacaaacaatgtgaaaacaatcagagcagttccgcttaaaata
aaaaaaccttccggcgctaaatataagctgaatgatttcgaagcacgcggcgaaatttat
atgaacatcgctgacttcgaagaattaaaccgacgacaggcagaaaaaggtgaaaaactt
tttgccaatccgagaaattcagcagcaggaactttgaaacttcaaaacccacaaattgtt
gcaagccgtagacttaatatttttctttatgcgctgtttagtcttgaagatgaatttgaa
tctcagtcagaaaatcttgagcttctgaaacaaatgggattcagagtaaatcccgattac
agagtttgcaagaatattgaagaagtattagaagtttgcagagagtttgaatcgaaacgc
aattcacttgaatatgaaattgatggtgcagttataaaagtaaattcaatccgtcagcaa
aatattttaggaagcattgctaaatcaccacgctgggctgttgcatataaattcaaagcc
aagcaggcatttacttatgttcgtgatattgtttggcaggttggacgaactggcgcagta
acaccagttgcagaacttgaaccagttaagcttgctggttcaacaatcagtcgcgctaca
cttcacaattttgatgaaataaaaagaaaagatattcgtgttggagataaagtcgtaata
gaaaaaggcggagatgtaattccgaaagtagtagctgtaattacagaagaaagaaaaaaa
gacagcaagccaactaaaccaccggaagtttgccctgtttgcaaatcaaaactttataaa
cccgaagatgaggttgcactttattgtgaaaatcctgaatgtccggctcagataaaagca
agacttattcattttgcttcgcgcggtgcaatggatatcgaaggacttggcgaagctttg
gttgatttatttgttgaaaaaggattccttaatactttttctgatatttatgaattgaaa
aaacatcgcgatgagttgattaagattgaacgacttggagaaaaaagtgttgacaatctt
ctgaatgcaattgaaaaaagtaaatcgcaaccattcgaaaaagttcttttcgctctggga
atcagatatgtcggagcaggggtggcacagaaacttgcagaacatttcggaaatattgat
gcactgattaaagctgatgaagaagaaatcttatctgtctatgaaattggtccgagtatc
agcaaaagtctaaaacaatttttttcagataaacataatcttgaacttattgagaaactg
aaaaaagccggacttagattttcatcagagcagaagaaacctgtaaaagacaatttcttt
aaggacaaaacttttgttcttacaggaactctatcttcattctcaagagatgaagctgca
gtaagaataaaaaaactcggaggcaaagttgcttcatcagtcagtaaaaatactgattat
gtaattgcaggagaaaaagcgggttcaaaactcgataaagcaaaatccctcggtgtgcaa
attatgaatgaagatgaatttctgaaattactcgatgagaataaaatctga
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