Intestinibacter bartlettii: NQ514_03280
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Entry
NQ514_03280 CDS
T08452
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ibr
Intestinibacter bartlettii
Pathway
ibr03030
DNA replication
ibr03410
Base excision repair
ibr03420
Nucleotide excision repair
ibr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ibr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ514_03280 (ligA)
03410 Base excision repair
NQ514_03280 (ligA)
03420 Nucleotide excision repair
NQ514_03280 (ligA)
03430 Mismatch repair
NQ514_03280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ibr03032
]
NQ514_03280 (ligA)
03400 DNA repair and recombination proteins [BR:
ibr03400
]
NQ514_03280 (ligA)
Enzymes [BR:
ibr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQ514_03280 (ligA)
DNA replication proteins [BR:
ibr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQ514_03280 (ligA)
DNA repair and recombination proteins [BR:
ibr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQ514_03280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQ514_03280 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQ514_03280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ514_03280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
Nlig-Ia
RNA_ligase
5_3_exonuc
NifT
RUBY_RBDX
PTSIIA_gutA
Zn_ribbon_NUD
Pro_CA_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UWO81516
LinkDB
All DBs
Position
633678..635702
Genome browser
AA seq
674 aa
AA seq
DB search
MSAQKRIEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRNDSPSNR
VGGKPLDKFEQVVHKIPMLSLSNAYSWEDLKDFDSRVREAVGSDVEYVVEFKIDGLSVGL
NYNNGIFESGATRGNGIVGENITKNLMTIKNIPLNIDEKGELTVRGEVYISKKDFEEINK
IQEEQDQPLYANPRNLAAGSLRQLDSKLTAKRPLDIFIFNLEDINSKQFKTHSESLEYLK
QLGFHVSPEFKVFKTMDEIIEYIKYWTEHREDLGFGIDGMVIKVNNLAQREQMGYTAKSP
RWAIAYKFPAERKETKLLDIVVEVGRTGTITPTAVLEPIRLAGTTVSRATLHNEDYINEK
DIKINDTVLVQKAGDIIPQVVEVIKEKRTGEEIEFKMPEECPVCGEPTVRLEGEAAVKCI
NISCPAQIRRGIIHFASREAMDIDGLGESIITLLLKQDLIKDISDLYYLKKEQISVLERM
GDKSATNLINAINKSKENDLWRFINGLGIKLIGTKAAKILASEFKDLDKLMSATEQELIN
LEEFGQTMADSVVEFFKEEKNISVIEKLKEAGVNTKLIESDDEDIPKIFEKMKIVLTGTL
PTLKRNDAKEMIEKRGGKATSSVSKSTSFVLAGEEAGSKLTKANDLGIKVIDEEKFLQLI
DLKTTDEVINNLEN
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctcaaaagagaattgaagaattaataaatttaataaattatcacaatgaaaaa
tactacaatcaagattcgccagaaatagaagactttgaatatgataatttgatgaaagaa
ttaatcaaattagaagaagagaatccagaattaaagagaaatgattctccatcaaatagg
gttggaggaaaaccattagataagtttgaacaagttgtacataaaatacctatgctaagt
ctttctaatgcatattcatgggaagatttaaaagattttgattcaagagtaagagaagct
gtggggtcagatgttgaatacgtagttgaatttaaaatagacggcttatcagttggtctt
aattacaataatggaatatttgaaagtggagcaactagaggaaatggtatagttggagaa
aatataactaaaaatttaatgactataaaaaatatacctcttaatatagatgaaaaaggt
gaacttacagtaagaggagaagtttatatatctaaaaaggattttgaagagataaataaa
attcaagaggaacaagatcaaccgctatatgcaaatccaagaaatttagcggcaggttct
ttacgccaattggattctaaattaactgcaaaaagaccattagatatattcatatttaat
ttagaagatataaattcaaaacaatttaaaacacatagtgaatcattagaatacttaaaa
caattaggtttccatgtaagcccagagttcaaagtattcaaaactatggatgaaataatc
gaatatattaaatattggacagaacatagagaagacttaggttttggaatagacggtatg
gtcataaaagtaaataatttagcacaaagagaacaaatgggttatactgcaaaaagtcca
agatgggcaattgcatataaattcccagcagaaagaaaagaaactaaattattagatata
gttgtagaagttggtagaacaggaacaataactccaacagcagttttagaacctataaga
ttagcaggaactacagtaagtagggctacacttcataatgaagactatataaacgaaaaa
gatataaaaataaatgatacagtattagttcaaaaagcaggggatataataccacaagta
gtagaggttataaaagaaaagagaactggtgaagaaatcgaatttaaaatgccagaagag
tgtcctgtttgtggcgagccaacagtaagactagaaggagaagcagctgttaaatgtata
aatatatcttgtcctgcacaaattagaagaggaattatccatttcgcatcaagagaagct
atggacatagatggattaggtgaatcaataataacattattgttaaaacaagatttaata
aaagatatatctgatttatactaccttaaaaaagaacaaatatcagtgcttgaaagaatg
ggagacaaatctgcaactaatttaataaacgctataaataaatctaaagaaaatgattta
tggagatttataaatggattaggtataaaattaatcggaacaaaagcggcaaaaatatta
gcaagtgaattcaaagatttagataaattaatgagtgcaacagaacaagaattaataaac
ttagaagaattcggtcaaactatggcagatagcgtagttgaattctttaaagaagaaaag
aatatatcagttatagaaaagctaaaagaagctggagtaaacacaaagctaatagaatca
gatgatgaagatataccaaaaatatttgaaaaaatgaagatagttttaacaggaactctt
ccaactttaaaaagaaatgatgcaaaagaaatgatagaaaaaagaggcggaaaagcaact
tcaagtgtaagtaaatctacttccttcgttctggcaggggaagaagctggttcaaaactt
acaaaagctaatgaccttggaataaaagttatagatgaagaaaaattcttacaattaata
gacttaaaaactactgatgaagttataaataatttagaaaactaa
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