Intestinimonas butyriciproducens: IB211_00109c
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Entry
IB211_00109c CDS
T04182
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ibu
Intestinimonas butyriciproducens
Pathway
ibu03030
DNA replication
ibu03410
Base excision repair
ibu03420
Nucleotide excision repair
ibu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ibu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IB211_00109c
03410 Base excision repair
IB211_00109c
03420 Nucleotide excision repair
IB211_00109c
03430 Mismatch repair
IB211_00109c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ibu03032
]
IB211_00109c
03400 DNA repair and recombination proteins [BR:
ibu03400
]
IB211_00109c
Enzymes [BR:
ibu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IB211_00109c
DNA replication proteins [BR:
ibu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IB211_00109c
DNA repair and recombination proteins [BR:
ibu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IB211_00109c
NER (nucleotide excision repair)
GGR (global genome repair) factors
IB211_00109c
MMR (mismatch excision repair)
DNA ligase
IB211_00109c
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IB211_00109c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
Nlig-Ia
Ogr_Delta
HHH_2
BRCT_2
HHH_5
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-ProteinID:
ALP92505
UniProt:
A0A0S2VZK4
LinkDB
All DBs
Position
complement(106623..108644)
Genome browser
AA seq
673 aa
AA seq
DB search
MEQNTLMKQRELTDRLNRYRDEYYNQNNPSVSDEVYDRLFDELENLEKETGVQMSNSPTI
TVGYPAVSKLEKTRHPIPLLSLEKEKDIMELRRFMGEQQTMLMLKLDGLTIKLTYEDGEL
VEAATRGDGDVGEIVTHNTRAISGIPAYIQYEGRLVVTGEAFIRPSDFERLKTSLVDSNG
ETYKNGRNLAAGSVRLQDAAVCLERCVTFMPFSVLEGYDDLHRKSDRLRELRTLGFNPCK
YLVTKRVLPPAEIEDGIKQLQQYARDADIPIDGIVVTYNDIDYSKSCGRTGHHYKDGLAF
KFEDELFQTKLQSIEWTPGRTGEIAPVAVFKPVEIEGCAVSRASLHNLSFIEELELMPGN
RILVSKRNMIIPHVEENMNRGGFRLDEVFPHHCPCCGEPTRIHETRGRDENGAERIIKTL
FCDNPACETRKLKQFVHFVSKKAMNIEGLSEATLEKLIGRGWIHSYLDLYHLDQHRDEIV
CMDGFGEKSWQRLWSAIQQSRNTTFERYVIAMDIPMIGNTASGVLCREFHASLDEFRDAV
YAGYDFRQLPDFGDTLHSNIHDWFCKEENFCIWEELQMMMNIQKPETVETQTAGRDNPYT
GKTIVVTGKVEPYTRDEMNSLIVSLGATAGSSVTRKTDYLVCGEKAGSKLSKARKLGIPV
LTPEEFFRTANVA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaataccttgatgaaacagcgggagctgacagaccggctcaaccgctaccgt
gacgaatactacaaccagaataaccccagcgtcagcgatgaggtgtatgaccgccttttc
gacgagctggagaacctggagaaagaaacaggcgtccagatgtccaactcccccaccatt
accgtgggctacccggcggtcagcaagctggaaaagaccaggcacccgatccctcttctg
tcgctggagaaagaaaaagacatcatggaactgcgccggtttatgggcgagcagcagacg
atgctcatgctcaagctggacggccttaccatcaaactgacctatgaggacggcgaactg
gtggaggctgccacccggggcgacggcgatgtgggtgaaatcgtcacacacaacaccagg
gcgatcagcggtattcccgcctatatccagtatgagggacgcctggtagtaaccggcgag
gcgtttatccgtcccagtgattttgaacggctgaaaacctcgctggtagacagcaacggt
gagacctacaaaaacggccgcaatctggcggccggctcggtacgcctgcaggacgccgcg
gtctgcctggaacggtgtgtgactttcatgccgttcagtgtcctggagggctatgacgat
ctgcacaggaaatcggaccggctcagggaacttcggacgctgggcttcaacccctgcaaa
taccttgtgaccaagagggtactgcccccggcagagattgaggatgggatcaagcagctt
caacagtacgccagggacgccgacatccctatcgacggtattgtagtgacctataacgac
atcgactattccaaaagttgcggccgcacagggcaccactacaaggacgggctcgcgttc
aagtttgaggacgagctgtttcagaccaaacttcaaagcatagaatggacgcccggccgg
accggagaaatcgcccctgtcgcggtctttaagccggtggagattgagggatgcgcggta
tcccgggccagcctgcacaacctgtcctttattgaggaattggagctgatgcccggcaac
cgcatcctggtcagcaagcggaatatgattattccccatgtagaggaaaatatgaaccgg
ggcggcttccgtctggacgaggtgtttccgcaccattgcccttgctgcggggaacccacc
cgaatccacgaaacccggggccgggatgaaaacggagcggaacggataatcaagactttg
ttctgcgataatcctgcctgcgaaacaaggaaactcaagcagtttgtccattttgtgagc
aaaaaggccatgaatatcgaggggctgtccgaggccacgctggaaaagctgattggacgg
ggctggatacacagctatctggacctctaccatctggaccagcaccgggatgagatcgtc
tgcatggacggcttcggtgaaaaatcgtggcagcggctttggagcgccatccagcagagc
cggaacaccacttttgagcggtatgtgattgccatggacatccccatgatcggcaatact
gccagcggtgttctctgcagggagttccacgccagcctggacgagttccgggatgccgtc
tacgccggctatgatttccgccagcttcccgattttggcgacaccctgcacagcaacatt
cacgattggttctgcaaggaagaaaatttttgtatttgggaggaattacagatgatgatg
aacattcagaaaccggaaaccgttgaaacccagaccgccggccgcgataatccctatacc
gggaaaaccatcgtggtgaccggaaaggtggagccctatacccgggacgagatgaacagc
ctgattgtttccctaggcgctacggccggcagttcggtgacccgcaagaccgattacctg
gtctgcggtgagaaagccggcagcaagctgtccaaggcgcggaaattgggcataccggtg
ctgacgccggaagagttcttccgcacggccaatgtggcctga
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