Intrasporangium calvum: Intca_2382
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Entry
Intca_2382 CDS
T01385
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ica
Intrasporangium calvum
Pathway
ica03030
DNA replication
ica03410
Base excision repair
ica03420
Nucleotide excision repair
ica03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Intca_2382
03410 Base excision repair
Intca_2382
03420 Nucleotide excision repair
Intca_2382
03430 Mismatch repair
Intca_2382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ica03032
]
Intca_2382
03400 DNA repair and recombination proteins [BR:
ica03400
]
Intca_2382
Enzymes [BR:
ica01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Intca_2382
DNA replication proteins [BR:
ica03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Intca_2382
DNA repair and recombination proteins [BR:
ica03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Intca_2382
NER (nucleotide excision repair)
GGR (global genome repair) factors
Intca_2382
MMR (mismatch excision repair)
DNA ligase
Intca_2382
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Intca_2382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ADU48889
UniProt:
E6SFW0
LinkDB
All DBs
Position
complement(2661222..2663369)
Genome browser
AA seq
715 aa
AA seq
DB search
MSDSTGSQAIEDAIPDEVHHEWADLAERASAAQFAYHVKDAPTISDAEYDGLIRRLNALE
AQWPSLRTPDSPTQKVGASAFATGFETVDHLERMLSLDNAFSFEELRAWAERVEREVGAG
AHFLTELKIDGLAVNLLYEQGRLVRALTRGDGRTGEDVTNNVRTIEGVPERLSGDDVPEL
VEIRGEVFFPTAGFADLNAALVAAGKAPFANPRNAAAGSLRQKDPKVTAGRPLRLLVHGI
GARRGFDIARQSEGYAALRSWGLPTSDQVKVLDDIADVEEFVTFHGEHRHDGLHEIDGIV
VKVDEVTLQRQLGATSRAPRWAIAFKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMQPVVV
AGSTVEQATLHNQHEVERKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERPFVMPTQC
PSCGTQLAPEKEGDKDIRCPNSRSCPSQLRERVFALASRSALDIEALGWEGSIALLESGI
LTDEGDLFAPPEDSPEAGAYGVTRERLAAVGLYTRAAKRTDDPAHVVDGRVLSANGEKLL
AELEKAKTQPLWRVLVALSIRHVGPTAARALATTFGSMDAIRRASIEELAEAEGVGQIIA
ESVTAWFAVDWHAEIVRKWAAARVRMEDEVDASVARTLEGRTVVVTGSLEGFSRDETKEA
ILSRGGKAAGSVSRKTDWVVVGANAGSKAAKAEELGLRVLDEAQFVRLLETGSPD
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacagcaccgggagccaggccatcgaggacgccatccccgacgaggtccaccac
gagtgggccgacctcgcggagcgggcgagcgcggcccagttcgcctaccacgtcaaggat
gcgccgacgatcagcgacgccgagtacgacgggctcattcggcggctcaacgcgctggag
gcgcagtggccctcgctccgcacgccggacagcccgacccagaaggtcggggcgtcggcg
ttcgccacgggcttcgagacggtcgaccacctcgagcggatgctgagcctggacaacgcg
ttctcgttcgaggagctgcgggcctgggccgagcgcgtcgagcgcgaggtcggtgccggg
gcgcacttcctcacggagctcaagatcgacggcctcgcggtcaacctcctctacgagcag
ggccgcctcgtccgggcgctgacgcggggagacggccggaccggcgaggacgtcaccaac
aacgttcgcaccatcgagggcgtgcctgagcggctgtcgggggacgacgtgccggagctc
gtcgagatccgcggcgaggtcttcttcccgaccgccgggttcgccgatctcaacgcggcg
ctcgtcgccgccgggaaggcccccttcgccaacccccgcaacgccgccgccggctcgctc
cggcagaaggacccgaaggtcacggcgggccgtccgctgcggctgctcgtccatgggatc
ggcgcccgccgcggtttcgacatcgcccggcagagcgagggctatgcggcgctccgatcc
tgggggctgcccacgtccgaccaggtgaaggtgctcgacgacatcgccgacgtggaggag
ttcgtcaccttccacggcgagcatcggcacgacgggctccacgagatcgacggcatcgtc
gtcaaggtcgacgaggtgaccctgcagcggcagctcggcgcgacgtcccgggcgccgcgg
tgggcgatcgccttcaagtacccgccggaggaggtcaacaccaggctcctcgacatcagg
gtcaacgtcggacgcacggggcgggtgacgccctacggggtcatgcagcccgtcgtcgtg
gccgggtcgaccgtcgagcaggcgacgctgcacaaccagcacgaggtggagcgcaagggc
gtgctcatcggggacaccgtcgtgctgcgcaaggcgggagacgtcatcccggagatcgtc
ggcccggtcgtcgacctccgcgatggcagcgaacgccccttcgtcatgccgacgcagtgc
ccgtcctgcggcacgcagctcgcgccggagaaggagggggacaaggacatccgctgcccc
aactcccgctcctgccccagccagctgcgtgagcgggtcttcgccctggcctcgcgttcg
gcgctcgacatcgaggcgctgggctgggaggggtcgatcgccctgctcgagtcggggatc
ctcaccgacgagggcgacctcttcgcgccgccggaggacagccccgaggcgggcgcctac
ggcgtgacgcgcgagcggctcgcggcggtgggcctctacacgcgcgcggcgaagaggacc
gacgatcccgcccacgtcgtcgatggccgggtcctgtccgcgaacggggagaagctgctg
gccgagctggagaaggccaagacccagccgttgtggcgggtcctcgtcgctctctcgatc
cggcacgtcgggcccaccgcggcccgcgcactggcgacgaccttcggctcgatggacgcg
atccggcgcgcgtcgatcgaggagctcgccgaggccgagggggtcgggcagatcatcgcc
gagtccgtgaccgcgtggttcgcggtggactggcacgccgagatcgtccgcaagtgggcc
gcggcccgggtgcggatggaggacgaggtggacgcgtccgtcgcccggacgctcgagggc
aggaccgtggtcgtcaccgggtcgctcgaggggttctcgcgtgacgagaccaaggaggcg
atcctcagccgcggcggcaaggcggcgggctccgtctcgcgcaagacggactgggtcgtc
gtcggcgcgaacgccgggtcgaaggccgccaaggcggaggagctcgggctgcgggtcctc
gacgaggcccagttcgtgcgcctcctcgaaacgggttcaccggactga
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