Candidatus Ishikawaella capsulata: ICMP_111
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Entry
ICMP_111 CDS
T04149
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
icp
Candidatus Ishikawaella capsulata
Pathway
icp03030
DNA replication
icp03410
Base excision repair
icp03420
Nucleotide excision repair
icp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
icp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ICMP_111 (ligA)
03410 Base excision repair
ICMP_111 (ligA)
03420 Nucleotide excision repair
ICMP_111 (ligA)
03430 Mismatch repair
ICMP_111 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
icp03032
]
ICMP_111 (ligA)
03400 DNA repair and recombination proteins [BR:
icp03400
]
ICMP_111 (ligA)
Enzymes [BR:
icp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ICMP_111 (ligA)
DNA replication proteins [BR:
icp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ICMP_111 (ligA)
DNA repair and recombination proteins [BR:
icp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ICMP_111 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ICMP_111 (ligA)
MMR (mismatch excision repair)
DNA ligase
ICMP_111 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ICMP_111 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
DNA_ligase_ZBD
BRCT
5_3_exonuc
RNA_lig_T4_1
PTCB-BRCT
DZR_2
Cmr2_hel_dom2
Motif
Other DBs
NCBI-ProteinID:
BAH82973
UniProt:
C5WCB7
LinkDB
All DBs
Position
complement(134039..136090)
Genome browser
AA seq
683 aa
AA seq
DB search
MEYIKKRVNKLRFILRYHAHLYYVMDAPKISDAKYDSLLLELHELEKQYPQLIHPDSPTQ
RIGDKPVMLFKQVTHSIPMLSLDNVFNKEDYKKFNTRIQKFFQKSNSIIKFCCEMKFDGL
AVSIIYENGVLVRAATRGDGNYGEDITKNVRTIRAIPIYLQGNNLPRLLDIRGEIIMMQD
GLKKINSEANKIGGKIFTNPRNAAAGSLRQLDPSVAAKRPLNFFCYSAGFIEGYSKLPNS
HWKQLQLFKSWGLPIHENISVVNNIEEVFSFYDKIKQERINLGFDIDGIVIKVDSIELQN
QIGYSIRAPRWAIAFKFPAQEEISTVLKVDFQIGRTGVITPVARLKPVKIAGVTISNVNL
HNENEIKRLGLSIGDKVVIRRSGDVIPKIISVLKNYKTINRNNILFPEHCPICGSTVERI
EGKSISRCTGSLICKSQRKEMLKHFASRSAMNIEGLGDKIIDALIQKNFLKTSFDFFQLT
IANLITIDRISNKLAKKLINSIEKSKKTTLARFIYALGIREVGEATANNLTNHFGSLKNI
MDATFNELSAIKNIGNISAKYIYNFMHEKNNRMVIDQLIQEAGVYWPTVNFSKINKINNL
IFKKTIVLTGSFIKIQRKELKYRIILLGAKINNNISKKSDLLIYGKNPSYNKIQQAQKLG
IKMIDETEVFKFLLQYDIDFKAL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaatatataaaaaaaagagtaaataaactgcgttttattttacgctaccatgcacat
ctttattatgtaatggatgctccaaaaatatctgatgctaaatacgacagcttattatta
gaactgcatgagttagaaaaacaatatccacaactaattcatcctgactcacctacacaa
cgtataggtgataaacctgttatgctttttaaacaagtaacacacagcattcctatgctc
tctttagataacgtctttaataaagaagattataaaaaatttaatacaaggatacaaaaa
ttttttcaaaaaagtaatagtattataaaattttgttgtgaaatgaaattcgatggattg
gcagtcagtataatttatgaaaatggtgtattagttcgtgctgcaactcgtggagatgga
aattatggtgaagatattacaaaaaatgtacgaactattcgtgcgataccaatttatctt
caaggaaataacctacctaggttattagacatccgtggtgaaattatcatgatgcaggat
ggattgaaaaaaattaattctgaagctaataaaataggtggtaaaatatttactaatcct
cgcaatgctgctgctggtagcctacgtcaacttgatccatctgttgcagctaaaagacca
ttaaatttcttttgttatagtgcgggatttatagaaggatatagtaaattacccaatagt
cattggaaacaactacaactgtttaaatcatggggattacccattcatgagaatattagt
gtagttaataatatcgaagaagttttttctttttatgataagattaaacaagaacgtatt
aatttagggtttgatattgatggcatagtaatcaaagttgattccatagagctgcaaaat
caaatcggctactcaatccgagccccacgctgggctattgctttcaaatttccagcacaa
gaagaaatatctactgtgcttaaggtagattttcaaataggtcgtactggagtgataaca
cctgttgctagactgaaacctgttaagatagcaggagtaacaattagcaatgtaaattta
cataatgaaaatgaaataaaaagattagggttatctataggtgataaagtagtcatcagg
cgtagtggcgatgttattcctaaaattatcagtgtacttaaaaactataaaactatcaat
agaaataacattttatttcctgagcactgtcctatttgtggttcaactgtagagcgcatt
gaaggtaaatctatctctcgttgtactggtagcttaatttgtaaatcacaaagaaaagag
atgcttaaacattttgcttctcgatcagcaatgaacattgagggtttaggagataaaatc
atagatgctcttatacaaaaaaactttttaaaaacatccttcgatttttttcaattaact
attgctaatttaattactatagacaggattagtaataaattggcaaaaaaattaatcaat
tctattgaaaaatcaaaaaaaacgacattagcgcgttttatttatgcattagggattaga
gaagttggagaagctacagcaaataatttaactaatcattttggctcattaaaaaatatt
atggatgctacttttaatgaactgtctgcaataaaaaatattggaaatatatctgctaaa
tatatatataattttatgcatgaaaagaacaacagaatggtcattgatcaattaatacaa
gaagctggagtatattggcctactgttaatttttcaaaaataaataagattaataattta
atttttaaaaaaactattgtattaactggatcttttattaaaatacaacgtaaagaactt
aaatatcgtattattttgttaggagcaaaaataaataataatatttctaaaaaatctgat
ttattgatttatgggaaaaacccgagttataacaaaattcaacaagctcaaaaactgggt
attaagatgatagatgaaacagaagtttttaaatttttgctgcagtatgacatagacttt
aaagcattataa
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