Ideonella dechloratans: LRM40_08735
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Entry
LRM40_08735 CDS
T07737
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
idc
Ideonella dechloratans
Pathway
idc03030
DNA replication
idc03410
Base excision repair
idc03420
Nucleotide excision repair
idc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRM40_08735 (ligA)
03410 Base excision repair
LRM40_08735 (ligA)
03420 Nucleotide excision repair
LRM40_08735 (ligA)
03430 Mismatch repair
LRM40_08735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
idc03032
]
LRM40_08735 (ligA)
03400 DNA repair and recombination proteins [BR:
idc03400
]
LRM40_08735 (ligA)
Enzymes [BR:
idc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LRM40_08735 (ligA)
DNA replication proteins [BR:
idc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRM40_08735 (ligA)
DNA repair and recombination proteins [BR:
idc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LRM40_08735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRM40_08735 (ligA)
MMR (mismatch excision repair)
DNA ligase
LRM40_08735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRM40_08735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DUF2116
Motif
Other DBs
NCBI-ProteinID:
UFU11725
LinkDB
All DBs
Position
1872057..1874147
Genome browser
AA seq
696 aa
AA seq
DB search
MSTNELPVPPEAAAEAAQLRATLHHHAHQYYVLDAPELPDAEYDRLFRRLQALEAQYPSL
LTADSPTQRVGGRVLDGFTPVRHAVPMLSIRTETDTTAGGAEAFDARVRRELALAEDAAP
IEYAAELKFDGLAMNLRYEHGVLVQAATRGDGETGEDVTQNIRTIGQIPLRLIGATPPVL
EIRGEVFMRRDDFEALNERQRALIAAGAKNEKTFVNPRNAAAGAVRQLDPAIAAKRPLSF
YAYGLGEVQGWDVPATHSGLLDAVAALGLPVCEHRAVVQGAAGLVAFHERMAALRDSLPF
DIDGVVYKVNDRALQERLGFVTREPRWAVAHKYPAQEQMTRLLDIDIQVGRTGKLTPVAK
LEPVFVGGTTVSNATLHNEDETRRKDVRVGDTVIVRRAGDVIPEVVGVVLDKRPEDVGEP
FDLYKRLGGQCPVCGSPIEREEGEVDWRCTGGLTCPAQRKQALLHFASRRAMDVEGLGDK
LVDQLVDAGIVRAIPDIYKLGFTSLATLERMGDKSAQNLLAAIEKSKTTTLGRFLFSLGI
RHVGETTAKDLARHFGNIDRLMDARVEELLEVNDVGPVVAESIRHFFDQPHHREVVEQLR
AAGVYWPDEAGLASDAPRPLLGQVLVLTGTLPTLSRDEAKALIEAAGGKVTGSVSKKTNY
VVAGEEAGSKLDKARELGITVLDEAGLRALLDGGTD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgaatgaactgccggtgccgcccgaggcggccgccgaggccgcacagctgcgc
gccacgctgcaccatcacgcccaccagtactacgtgctggatgcgcccgagttgccggac
gccgagtacgaccgcctgttccggcgcctgcaggcgctggaggcacagtaccccagcctg
ctgacggccgattcgcccacccagcgggtggggggccgcgtgctggacggtttcacgccc
gtgcgccacgcggtgcccatgctgtccatccgcaccgagaccgacaccaccgccggcggg
gccgaggccttcgacgcccgggtgcggcgtgagctggccctggccgaagacgcggccccc
atcgagtacgccgccgagctgaaatttgacggcctggccatgaacctgcgttacgagcac
ggcgtgctggtgcaggccgccacccggggcgatggcgagaccggcgaggacgtgacccag
aacatccgcaccatcggccagatcccgctgcgcctgatcggcgccacgccgccggtgctg
gagatccgcggcgaggtcttcatgcggcgcgacgacttcgaggccctgaacgagcggcag
cgcgcgctcattgccgctggcgccaagaacgagaagaccttcgtcaacccgcgcaatgcc
gccgccggcgccgtgcgccagctggacccggccattgccgccaagcgcccattgagtttc
tatgcctatggcctgggcgaggtgcagggctgggacgtgcccgccacccacagcggcctg
ctggacgcggtggccgcgctgggcctgccggtgtgcgagcaccgcgcggtggtacagggc
gcggccggcctggtggcctttcacgagcgcatggccgcgctgcgcgacagcctgccgttt
gacatcgacggcgtggtctacaaggtgaacgaccgggccctgcaggagcgcctgggcttc
gtcacccgtgagccgcgctgggccgtggcccacaagtacccggcgcaggagcagatgacg
cgcctcctggacatcgacatccaggtcggccgcaccggcaagctcaccccggtggccaag
ctggagccggtgttcgtcggcggcaccaccgtcagcaacgccacgctgcacaacgaggac
gaaacccgccgcaaggatgtgcgggtgggtgacaccgtcatcgtgcgccgcgcgggcgat
gtcatccccgaggtggtgggtgtggtgctggacaagcgccccgaggacgtgggcgagccc
tttgacctgtacaagcgcctggggggccagtgccccgtgtgcggcagccccatcgagcgc
gaagagggcgaggtggactggcgctgcaccggcggcctgacctgcccggcccagcgcaag
caagccctgctgcactttgccagccgccgcgccatggatgtggaaggcctgggcgacaag
ctggtcgaccagttggtggacgcgggcatcgtgcgcgccatccccgacatctacaagctc
ggcttcacgtccctggccacgctggagcgcatgggcgacaagagcgcccagaacctgctg
gccgccatcgagaagagcaagacgaccacgctgggccgcttccttttcagcctgggcatc
cgccatgtgggcgagaccacggccaaggacctggcgcgccacttcggcaacatcgaccgg
ctgatggacgcccgcgtggaggagctgctggaggtgaacgatgtgggcccggtggtggcc
gaaagcatccgccacttcttcgaccagccgcaccaccgcgaggtggtggagcagctgcgc
gcggccggtgtgtactggcccgacgaggccggcctggccagcgacgcaccgcgcccgctg
ctgggccaggtgctggtgctgaccggcacgctgcccacgctcagccgcgacgaggccaaa
gccctgatcgaagccgccggcggcaaggtgacgggctccgtctcgaagaagacgaactac
gtggtggccggcgaagaggccggcagcaagctggacaaggcccgcgagctgggcatcacc
gtgctggacgaggccgggctgcgtgccttgctcgacggcggaacagactga
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