Idiomarina sp. X4: CWC33_10055
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Entry
CWC33_10055 CDS
T05226
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
idi
Idiomarina sp. X4
Pathway
idi03030
DNA replication
idi03410
Base excision repair
idi03420
Nucleotide excision repair
idi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
idi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CWC33_10055 (ligA)
03410 Base excision repair
CWC33_10055 (ligA)
03420 Nucleotide excision repair
CWC33_10055 (ligA)
03430 Mismatch repair
CWC33_10055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
idi03032
]
CWC33_10055 (ligA)
03400 DNA repair and recombination proteins [BR:
idi03400
]
CWC33_10055 (ligA)
Enzymes [BR:
idi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CWC33_10055 (ligA)
DNA replication proteins [BR:
idi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CWC33_10055 (ligA)
DNA repair and recombination proteins [BR:
idi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CWC33_10055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CWC33_10055 (ligA)
MMR (mismatch excision repair)
DNA ligase
CWC33_10055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWC33_10055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
HHH_3
DZR_2
SHE3
End3
Motif
Other DBs
NCBI-ProteinID:
ATZ74011
LinkDB
All DBs
Position
2077563..2079575
Genome browser
AA seq
670 aa
AA seq
DB search
MNQSTAQRMQELEQLLNRYNKEYYENDEPSVPDAEYDKLFRELQELEKQNPDLKSKTSPT
TKVGGKPLAKFNTVKHEVPMLSLDNAFSAEEFAAFSKRIGQKLDEGTQVTFCCEPKLDGA
AVSLLYESGVLVRGATRGDGESGEDITENVKTIRNIPLKLTGDFPERLEVRGEVVMPISA
FDRFNDKARQQGEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGLVSEQTVLPDSH
YERLQQLAGWGLPVNSEIEQVDSVEGCDNYYEKILERRDSLNYDIDGVVFKVDTIALQET
LGFVARAPRWAIARKFPAQEQLTTITGVDFQVGRTGAITPVARLKPVSVGGVTVSNATLH
NADEIERLGVQIGDTVSIRRAGDVIPQVVSVLKDKRPTDAQDIIFPTHCPVCDSDVERIE
GEAVARCSGGLYCAAQRKEAIKHFASRKAMDIDGLGDKLVDVLVEKDWIKSPADLYRLSK
AELATLPRMAAKSAENLKSAIAATEETTLARFLYALGIREVGEATAKALARHFKTLEAIQ
SASSEQLQEVPDVGTVVAEHIVRFFRESHNENVVKELREFIHWPEGEDAGDIQSDRLAGN
TYVITGTLSTMTRDEAKQALEALGAKVSGSVSKKTTALIAGESAGSKLTKAQSLGLSILS
EDELKELLES
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaatctactgcccagcgaatgcaagagctggaacaattactgaatcgctacaac
aaagaatattacgaaaatgatgagccgtcggttcctgatgctgagtacgacaaactattt
cgtgaattgcaggaactggaaaagcaaaacccggacttaaaaagtaagacatcgccaacg
actaaagtgggcggtaagccgttagccaaatttaacacggtaaaacatgaagtaccgatg
ttgtctttagataatgccttttctgcggaagagtttgcggcattttctaagcgcattggg
caaaagctggatgagggaactcaggtcacgttctgttgcgaacccaagctggatggtgcg
gcagtgagtttgctgtatgagtcaggagtactggtgcgcggcgcaacccgtggcgacggt
gaaagtggcgaggacattaccgaaaatgtcaaaaccattcgcaatatcccgctcaaatta
acaggcgattttcctgaacgactggaagtgagaggcgaagtggtgatgccaattagcgcc
tttgatcgctttaatgacaaggcgcgccaacagggagagaaagtatttgctaacccaaga
aatgcggcagcgggcagcttacggcaactggactcccggataaccgccaagcgacctttg
catttttatgcctatagtctgggattagtttccgaacaaaccgtactgccggacagccac
tatgagcggcttcaacaactcgctggctggggacttcctgtcaacagtgaaattgaacaa
gtagactccgttgagggttgcgataattactacgagaaaatacttgagcgccgtgactca
ttgaattacgacattgatggggtggtttttaaagttgataccatcgcactgcaggaaacg
cttggctttgttgccagagcgcctcgctgggctattgcccgaaagtttccggcacaagag
cagctgactaccattaccggtgtcgactttcaggtaggacgtaccggcgcgattactcca
gtcgctcgattgaaacccgttagtgtgggaggcgttaccgtatcgaatgcaaccttgcat
aacgccgatgaaattgagcgcttgggtgtgcaaataggagacacggtgagtatccgacgc
gccggtgatgtgattcctcaagtcgtcagtgtgttaaaagacaaacgtccgacggacgca
caggacattattttcccgacacattgtcccgtttgtgattctgacgttgagcgcattgag
ggcgaagctgttgctcgctgcagtggtggactctattgtgcggctcaacgcaaagaagca
attaagcactttgcctcgcgtaaggccatggatatcgacgggttaggggacaaactggtc
gatgtcttggttgaaaaggactggataaagtctccagctgatttataccgtttgagtaaa
gccgagttggcaaccttgccaagaatggcggctaaatccgctgaaaacctaaaaagcgca
atagcagcaaccgaagagacaacgttggctcgctttctctatgcgttaggtattagagag
gtgggtgaagctactgcaaaggccttagcaaggcactttaaaacccttgaggcgattcag
tctgccagcagcgagcaattgcaggaagtgcctgatgttgggacggtcgtggccgaacac
attgtgcgctttttccgcgaatcgcataacgaaaacgtagtgaaagagctacgtgagttt
atccattggccggaaggcgaagacgcaggcgacatacaaagcgatcgcttagctggaaat
acttacgtcattaccggtacgttgtcgacaatgacccgtgacgaagccaaacaggcgtta
gaagcgctaggagcaaaagtcagtggcagtgtgtctaagaaaacaaccgcgctcatcgct
ggagaaagtgccggttcaaaactgacgaaagcccagtcgcttgggctttcgatactgtcc
gaagatgaactgaaagagttgctggagagctag
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