Isoptericola dokdonensis: I598_0027
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Entry
I598_0027 CDS
T04384
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ido
Isoptericola dokdonensis
Pathway
ido03030
DNA replication
ido03410
Base excision repair
ido03420
Nucleotide excision repair
ido03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ido00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I598_0027 (ligA)
03410 Base excision repair
I598_0027 (ligA)
03420 Nucleotide excision repair
I598_0027 (ligA)
03430 Mismatch repair
I598_0027 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ido03032
]
I598_0027 (ligA)
03400 DNA repair and recombination proteins [BR:
ido03400
]
I598_0027 (ligA)
Enzymes [BR:
ido01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I598_0027 (ligA)
DNA replication proteins [BR:
ido03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I598_0027 (ligA)
DNA repair and recombination proteins [BR:
ido03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I598_0027 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I598_0027 (ligA)
MMR (mismatch excision repair)
DNA ligase
I598_0027 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I598_0027 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Zn_ribbon_TFIIB
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
ANC29626
UniProt:
A0A168E526
LinkDB
All DBs
Position
30161..32614
Genome browser
AA seq
817 aa
AA seq
DB search
MTDTEPAAGPAALDEASARRRWAELVALVEEDRAAYYEHDAPKVSDAEYDDRLRELEALE
AAHPALRSPESPTQRVGGRAAAGFETVAHLERMLSLDNVFSTDELRAWDARVARDLGVPD
GDVGYLSEVKIDGLAIALLYEKGRLVRAATRGDGREGEDITQNARRIADIPERLQGSGHP
DVVEVRGEVFIPVAAFDRLNELQGETRVRAVQEARERRTFDEERAQEAALRRFPHFANPR
NAAAGGLRQMLDKKSGLDLEVGLARVEALRLYAHGVGALQWTAGEHEELANQSDAYALFE
QWGVPVSPHNRVVQGVDGVLAMIEHFGAHRHDIEHELDGIVVKVDALADQRRLGSTSRAP
RWAIAYKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVKVAGSTVRQATLHNQDVVRAK
GVRIGDMVVLRKAGDVIPEILGPVTALADDGFPREDFVMPAECPECGTPLRPMKEGDVDL
RCPNAESCPAQVRGRVEHIGSRGGLDVEALGEVTAAALTQPLEPAEPPLRTEKDLFALTV
EQLAPIKVVVRDPETGLPRPSDGKGESADVTMSDGSVLTAKVARPFQKVVARTYPPGFED
ATPAERRAAGVRKDFPVYGPSSTAEKLVAELDRARTKDLWRLLVSLNVRHVGPVAARALA
DWFGSLDRIRAASREDLAAVEGVGPVIADELLAWFDVDWHREILEAWTRAGVRFEVPGHP
GPEARAEEAAAGPTGPLAGLTVVVTGSLEGYSRDGAKEAILAAGGKAAGSVSKRTDYVVV
GENAGSKAAKAEELGLPVLDEAGFTALLAGGPAALEA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaccgaacccgccgccggacctgccgcgctcgacgaggcctcggcgcggcgg
cgctgggccgagctcgtcgccctcgtcgaggaggaccgcgccgcgtactacgagcacgac
gcgccgaaggtctcggacgccgagtacgacgaccgcctgcgcgagctggaggcgctggag
gcggcgcaccccgcgctgcgcagccccgagtcgccgacgcagcgggtcggcggccgcgcg
gcggccgggttcgagaccgtcgcgcacctggagcggatgctgtcgctggacaacgtgttc
agcaccgacgagctgcgggcctgggacgcgcgcgtggcgcgcgacctcggcgtgccggac
ggcgacgtcggctacctgtccgaggtgaagatcgacgggctcgcgatcgcgctgctctac
gagaagggtcgcctggtgcgggccgcgacgcgcggcgacggccgcgagggcgaggacatc
acccagaacgcccggcgcatcgccgacatccccgagaggttgcagggcagcggccacccc
gacgtcgtcgaggtgcgcggcgaggtcttcatcccggtggccgccttcgaccggctcaac
gagctgcagggcgagacgcgcgtccgggcggtgcaggaggcccgggaacgtcgcacgttc
gacgaggagcgggcgcaggaggccgcgctgcggcggttcccgcacttcgccaacccgcgc
aacgcggcggcgggcgggctgcgccagatgctggacaagaagtcgggtctcgacctcgag
gtgggtctcgcccgggtcgaggcgctgcggctgtacgcccacggcgtcggcgcgctgcag
tggacggcgggggagcacgaggagctcgcgaaccagtcggacgcctacgccctcttcgag
cagtggggcgtcccggtctccccgcacaaccgggtggtgcagggcgtcgacggcgtgctc
gcgatgatcgagcacttcggcgcgcaccggcacgacatcgagcacgagctcgacgggatc
gtggtgaaggtcgacgccctggcggaccagcgccgcctcggcagcacgagccgcgccccg
cgctgggcgatcgcctacaagtacccgcccgaggaggtcaacacccgcctgctcgccatc
caggtcggcgtgggccgcaccggccgggccaccccgtacgcggtcatggagcccgtcaag
gtcgccgggtccaccgtccgccaggccaccctgcacaaccaggacgtcgtgcgcgccaag
ggggtgcgcatcggcgacatggtggtgctgcgcaaggccggggacgtcatcccggagatc
ctcgggcccgtcaccgcgctcgccgacgacggcttcccccgcgaggacttcgtcatgccc
gccgagtgccccgagtgcggcacgccgttgcggcccatgaaggagggcgacgtcgacctg
cgctgccccaacgccgagtcgtgcccggcccaggtgcgcggacgcgtcgagcacatcggc
tcccgcggcgggctcgacgtcgaggcgctcggcgaggtgaccgctgccgccctcacccag
ccgctggagcccgcggagccgccgctgcgcaccgagaaggacctcttcgcgctcaccgtg
gaacagctcgccccgatcaaggtcgtggtgcgtgacccggagaccggcctgccgcggccc
agcgacggcaagggcgagtcggccgacgtcaccatgtccgacgggtcggtgctgacggcg
aaggtcgcgcggccgttccagaaggtcgtcgcgcggacctacccgcccggcttcgaggac
gccacgcccgccgagcgccgtgccgccggcgtgcgcaaggacttcccggtgtacgggccg
tccagcaccgccgagaagctggtcgccgagctcgaccgggcgcgcaccaaggacctgtgg
cggctcctcgtctcgctcaacgtccggcacgtgggtcccgtcgcggcccgggcgctggcg
gactggttcgggtcgctggaccggatccgcgcggcatcgcgggaggacctcgcggccgtc
gagggcgtcggcccggtcatcgcggacgagctcctcgcctggttcgacgtcgactggcac
cgggagatcctcgaggcgtggacgcgcgcgggcgtgcggttcgaggtaccgggccacccc
ggaccggaggcacgcgccgaggaggccgccgctgggccgaccggaccgctggccgggctg
acggtcgtcgtcaccgggtcgttggaggggtacagccgcgacggcgcgaaggaggcgatc
ctggccgcgggtggcaaggcggccggttcggtgtcgaagcgcaccgactacgtcgtggtg
ggggagaacgccggctccaaggccgccaaggccgaggagctcgggctgcccgtcctcgac
gaggcgggcttcaccgccctgctggcgggcggcccggcggcgctggaggcctga
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