Iocasia frigidifontis: GM661_05505
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Entry
GM661_05505 CDS
T07718
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ifn
Iocasia frigidifontis
Pathway
ifn03030
DNA replication
ifn03410
Base excision repair
ifn03420
Nucleotide excision repair
ifn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ifn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GM661_05505 (ligA)
03410 Base excision repair
GM661_05505 (ligA)
03420 Nucleotide excision repair
GM661_05505 (ligA)
03430 Mismatch repair
GM661_05505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ifn03032
]
GM661_05505 (ligA)
03400 DNA repair and recombination proteins [BR:
ifn03400
]
GM661_05505 (ligA)
Enzymes [BR:
ifn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GM661_05505 (ligA)
DNA replication proteins [BR:
ifn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GM661_05505 (ligA)
DNA repair and recombination proteins [BR:
ifn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GM661_05505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GM661_05505 (ligA)
MMR (mismatch excision repair)
DNA ligase
GM661_05505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GM661_05505 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
Nlig-Ia
RNA_ligase
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QTL97476
UniProt:
A0A8A7K6Y2
LinkDB
All DBs
Position
1158565..1161138
Genome browser
AA seq
857 aa
AA seq
DB search
MYEAIKIKMKKLREKVRHHEYKYYVLDSPEISDAEFDQLVRELQNFEEEYPELITPNSPT
QRVGGELLDSFEKVEHTVPMLSLSNAFNDGELREFAYRVYKLVGTKDIEFVIEHKIDGLS
VILTYEKGLLTVGATRGNGVIGGNVTENIKTIRSIPLSLPEELSAEIRGEVYISKSDFEY
INNKRFDEGEEPFANPRNAAAGSIRQLDPRIAAERSLSMLAYDLVSIEGQEFDTHTDAME
FLKGMGFKVNWYHKCKNIDDVIELCNQWTEERDNLPYEIDGLVIKVNNLDLREQLGTTAK
SPCWAIAFKFSFHQKTTVVKDIIISVGRTGELTPIAILGPVCLEGFTVSRATLHNEDEIK
RKDVRIGDHVLVRKAGGVIPEVVKIIEEKRNGSEEVFKMPDRCPECGAMVLRQGEGPFIW
CINNSCIAQRRDCILHFISRKAMNIKGVEYELIDQLIEGSIIEDYADLYLLTINDLINIG
NLNYQLAINIINAIEKSKTRPLQNLVFALGIKQVGVGIARILATKFNSVEELSQAKLADL
ESIDGVHPTLANNIINFFSLPQNQRVIEKLKDAGVIMNNKLRRKNNEKSSKLENIFKYEI
KEVKYKFIRVHIELLLDDNNYSIFYKEFKYYLLRNTLTEDGYNWITKLLEGKKIDDKKRN
YLKNSLKRIFTNEDHLKGLIGEYILSFYYRNIEENYLWDYGPKGRSSAEPGIDYIVFTGA
ENNIKDIRFTVWETKTTESNVNNRASEIYSFFGKNGSFDENIDYEIKAIQELFKNKEKSN
LKKVVAKLPYYVLNRDKNLRIGASIILKEDTTTLNTLKSFEKCFPELTKEQRIVKFIFFL
LLNKVMKDLVRDIWKTL
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaagcaattaaaattaaaatgaaaaaattaagagaaaaagttcgtcatcatgaa
tataaatactatgttctagactcacctgaaatatctgatgcagagttcgatcaattggtg
agagagttacaaaattttgaggaagaatatccagaattaataaccccaaattcacctact
caacgagtgggaggagaactgcttgatagctttgagaaggtggaacatacagtacccatg
ctcagcttgagcaatgcctttaatgatggcgaactaagggaatttgcatacagggtttat
aaattagtcggaacaaaggatattgaatttgtaattgaacataaaatagatggattatca
gtaatacttacatatgagaaaggattacttacagtaggggctacccgtggtaatggtgtt
attgggggaaatgtcaccgagaatataaagaccatcaggtctataccattgagtcttcct
gaagaactttccgctgaaataagaggagaagtctatatcagtaagtctgattttgagtat
atcaacaataagagatttgatgaaggagaagagccttttgccaatcccagaaatgctgca
gctggttccatcagacaactggatccgcgtattgctgcagaaagatcattatcaatgctt
gcctatgatttggtcagtattgaaggacaggagtttgatacacatactgatgcaatggaa
tttctcaagggaatggggtttaaggtaaactggtatcacaaatgtaagaatattgatgat
gttattgaattatgtaatcaatggacagaggagagggataatcttccctatgaaatcgat
ggacttgttataaaagtaaataatctcgacttaagagaacagcttggtactactgccaag
agtccgtgctgggcaatagcttttaagttctcttttcatcagaagaccacagttgtcaag
gatattatcatttctgtagggcgtactggagaattgacccctattgcaattctgggtcct
gtttgtctggaaggatttacagtcagcagggcaactttacataatgaagatgagataaaa
agaaaagatgtcaggattggtgatcatgttttggtgcggaaagctggaggagttatccca
gaggtagtaaagattatagaagaaaaaaggaatggaagtgaagaggtctttaaaatgccg
gataggtgtcctgagtgtggtgctatggttttaagacagggagaaggaccctttatctgg
tgtattaataattcttgtattgctcagcgtcgggattgtattttacattttatatcacgg
aaggctatgaatattaaaggagttgaatacgaattaattgatcaacttatagaaggaagt
ataattgaggattatgcagatctttacttactaactattaatgatcttataaatattgga
aatttgaattaccagttagcgataaatattattaatgctatagaaaaaagtaaaacgaga
ccactacagaatcttgtatttgctttgggaataaaacaagttggagtagggattgccaga
attttggcaacaaaatttaattcagttgaagaattatctcaggctaagttagccgaccta
gagtcaatagatggagttcatccaactttagccaataatattattaatttcttttctcta
cctcaaaatcagagagttatagaaaaattaaaagatgctggagttatcatgaataataag
ttaagaagaaaaaataatgaaaaatcctctaaattagaaaatatatttaaatatgaaata
aaagaagtgaaatacaaatttattagagttcatatagagttattattagatgataataac
tatagtattttttataaagagtttaaatactacttattaagaaatacattaacagaggat
gggtataattggattactaaattattagaaggtaaaaagattgatgataaaaagcgtaac
tatttaaaaaattcattaaaaaggatttttactaatgaagatcatttaaaaggattaatt
ggagaatatatcctaagtttttattatagaaatattgaagaaaattatttgtgggattat
ggacctaaaggaaggagttcagctgaaccagggattgattatattgtatttactggggca
gaaaataatatcaaagatataagatttactgtttgggaaactaaaacaacagaaagtaat
gtaaataatagagcaagtgaaatttattcttttttcggtaagaatggtagttttgatgag
aatattgattatgaaattaaagcaatccaggagttgtttaaaaacaaggagaagagtaat
ttgaagaaagtagtagcaaaacttccttattatgtattaaatagagataaaaacctcaga
ataggagcatctattatattaaaggaagatacaactactcttaatactttaaaatctttt
gaaaaatgttttcctgaattaactaaggaacaaagaatagtaaaatttatattttttttg
ttgttaaataaggttatgaaagatttggtgagagacatatggaaaacattataa
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