Ictalurus furcatus (blue catfish): 128601263 Help Entry 128601263         CDS       T09387                                  Symbol thbs1b Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism ifu  Ictalurus furcatus (blue catfish) Pathway ifu04115   p53 signaling pathway ifu04145   Phagosome ifu04148   Efferocytosis ifu04350   TGF-beta signaling pathway ifu04510   Focal adhesion ifu04512   ECM-receptor interaction ifu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ifu00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     128601263 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128601263 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     128601263 (thbs1b)    04148 Efferocytosis     128601263 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     128601263 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     128601263 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     128601263 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ifu04131]     128601263 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ifu00536]     128601263 (thbs1b) Membrane trafficking [BR:ifu04131]  Endocytosis   Phagocytosis    Opsonins     128601263 (thbs1b) Glycosaminoglycan binding proteins [BR:ifu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128601263 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 cEGF EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  128601263 NCBI-ProteinID:  XP_053470302 LinkDB All DBs Position 25:complement(1441386..1452459) Genome browser AA seq 1189 aa AA seqDB search MIYFKVMNAVYRSKRRGSAMKLTGIFLLVMLWSCESARVAESRDDNSVYDLFELVQVSKK HHGVMPVKGDDPYSPAYKILNPDLIPPVPESAFRDLVDSVQAERGFLFLVNFKQARRTRG SLFTVEKRDGSGTLFEVVSNGKANTLDIVFATENKQQVVSIEEAELATGHWKNITLLVQE DRVHFYVGCEEVNNAELDVSIQSVLTPETPSIANLRIGKGAVNERFMGVLQNVRFVFGTT LDAILRNKGCQNSVTDTITLHNPVNGSSPAIRTDYTGHKTKDLQMICGYTCEDLASMFKE LKTLGVMVKDLTDKLRKVTNDNPLLGGTLGIHSGVCLHNGILHRNKDEWTVDDCTECTCQ NSATVCRKISCPLLPCANATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGKGIQQ RGRSCDRINNNCEGTSVQTRDCYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRL CNSPTPQLGGKECQGQGRQTEKCEKSQCPINGGWGPWSPWDTCSATCGGGVQNRKRLCNS PLPKYGGKDCVGDGTATQLCNKQACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTG NGINCKDIDECKEVPDACFEFNGVHRCENTVPGYNCLPCPPRYSGAQPFGRGVEEAAVKK QVCTPRNPCLDGSHDCNKNARCNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNA DLVCVENATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPFLYNPR QYDYDRDDVGDRCDNCPYNSNPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYLYNVDQ KDTDLDGVGDQCDNCPLEHNPDQLDTDSDLVGDKCDSNQDIDEDGHQNNLDNCPYIPNAN QADHDKDGKGDACDYDDDNDGIPDDKDNCRLVFNPDQLDTDGDGRGDVCKDDFDQDNVLD IYDVCPENFDISETDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFD EFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSNTPTKAQGYSGL SIKVVNSTTGPGEHLRNALWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHI RVVMYEGKKIMADSGRIYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3570 nt NT seq  +upstreamnt  +downstreamnt atgatttactttaaggttatgaatgctgtttacaggagcaagagaagaggctctgcaatg aagttaacaggaatatttttattagtgatgctttggagctgcgagagcgcacgagtggca gaaagcagagacgacaacagcgtttacgacctgttcgagctcgttcaagtgtctaagaag caccacggggtcatgcccgtgaagggcgacgacccctacagtccagcctacaagatcctg aacccggacctgatcccgccggtgcccgagagcgcgttccgagacctggtggactcggtg caggcggagcgcggcttcctgttcctggtcaacttcaagcaggcgcggcgcaccaggggc tccctgttcaccgtggagaagcgtgacggctccggcaccctgttcgaggtagtctccaat ggcaaagccaatacgctggacatcgtgttcgccacggaaaacaaacagcaagtggtgtcc atcgaggaagcggaactggccacgggtcactggaagaacattacgctcttggtgcaggag gacagggtgcacttctatgtcggatgcgaggaggtgaacaacgccgagctggacgtgtcc atccagagcgtgctcactccggagacgccaagcatcgccaacctgcggatcggcaaggga gccgttaatgaaagattcatgggtgtgctccaaaacgttcgattcgtttttgggaccact ctggatgcaatactgaggaataaagggtgtcaaaactccgttactgacactataactcta cataatccggttaatggatccagtccagctatcagaactgattatactggccacaaaaca aaagatttgcagatgatttgtggatatacctgtgaggacctggccagcatgtttaaggaa ctaaagactcttggtgtaatggtgaaagatctgaccgacaagctccgcaaagtgacaaat gacaaccctttgcttggtggaaccttgggaatccattctggtgtctgtctccacaatggc attttgcataggaacaaggacgaatggacggtggatgactgcactgagtgcacttgccag aactcggcgacagtgtgccgtaagatttcctgtcccttgcttccctgtgccaatgcaact gttcctgatggtgaatgctgcccccgatgtggaactcccagtgactatgctgaggatggc tggtccccctggtctgaatggactcattgttctgtgtcctgtggaaagggcattcagcag cgtggccgctcctgtgaccgcatcaataacaactgcgagggcacatctgtgcaaacgaga gactgctacctccaggagtgtgacaagcgctttaagcaggatggcaactggagccactgg tcgccgtggtcgtcttgttcagttacctgtggatcgggagttatcacacgcatccgtctc tgcaactctcctactccccagctgggaggaaaagagtgtcagggccaaggcaggcagact gagaaatgtgagaagtcacaatgtccaatcaatggtggttgggggccatggtcaccttgg gatacctgttcagcaacctgtgggggcggtgtccaaaatcgcaaacgtctttgtaatagt ccactacccaagtacggtggcaaagactgtgttggtgatggaacggctactcagctgtgc aacaagcaagcgtgtcctatcgatggatgtctgtccaatccctgttttgctggagccaag tgtacaagctttccagatgggtcttggaaatgtggaaaatgcccagcaggttacactggc aatggtattaactgcaaagacattgacgagtgcaaggaggttcctgatgcttgcttcgaa tttaatggagtccatagatgtgaaaatacagtacctggctacaactgcctgccatgtcct ccacgctacagtggagcacagccatttggccgtggagttgaggaagctgctgtgaagaaa caggtgtgcacacctcgtaatccttgccttgatggaagccatgactgtaataagaatgcc cgctgcaactacctgggccatttcgcagaccccatgttccgctgtgagtgcaagcctggc tacgctgggaatggacacatctgtggcgaggacacagatctggatggctggcctaatgct gaccttgtgtgtgtggagaatgctacctaccactgcaagaaggacaactgcccaaacctt cccaattctggtcaggaggactatgacaaggatggaattggtgatgcttgtgatgacgac gatgatgatgatggcattcctgacgacagggacaactgcccattcctttacaatcccaga cagtatgactatgaccgggatgatgttggtgaccgctgtgacaactgcccatacaatagc aaccctgaccagactgacacagacaacaacggtgaaggtgatgcgtgtgccgtagacatt gatggcgatggtattctgaatgaaaaggataactgtccttatctgtacaatgtggaccaa aaagatactgatctggacggggttggtgaccagtgtgataactgccctctggagcacaat cctgaccagctggatacagactctgaccttgtaggagataagtgtgatagcaatcaggac attgacgaagatggtcatcaaaacaacctggacaactgcccttatattcccaatgccaac caggctgaccatgacaaagatggcaaaggagatgcttgtgattatgatgatgacaatgat ggcatccctgatgataaagataactgtcgactggttttcaacccagatcagctggacact gatggtgatggacgtggtgatgtttgtaaggatgactttgaccaggacaacgttctagac atctatgatgtgtgcccagagaactttgacatcagtgagactgacttccgcaagttccag atggtgcctctggaccccaagggcacttcccagattgatcctaactgggtggttcgtcac caagggaaagagttggttcagacagttaactgtgacccaggcattgctgttggttttgat gagtttaatgctgtggacttcagtgggacgttcttcataaatacagagagagatgatgac tatgcaggatttgtgtttggttaccaatccagctctcgcttctatgtggtgatgtggaag cagataactcagacctactggtccaacacacccaccaaggcacagggttactcagggctg tcaatcaaagtggttaactcaaccactggaccaggtgaacacctaaggaatgccctttgg cacactggggatactcctggacaggtccgcactctgtggcatgaccctaagaatgttggt tggaaggattttactgcctacagatggcacctgactcacagaccaagaacaggacacata agggttgttatgtatgaaggaaagaagatcatggcagattctggaagaatctatgacaaa acatatgcaggtggacgactaggtctttttgtcttctcacaagagatggtatacttctca gaccttaaatatgaatgcagagatgcataa

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