Ictalurus furcatus (blue catfish): 128601750
Help
Entry
128601750 CDS
T09387
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128601750 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128601750 (eftud2)
Spliceosome [BR:
ifu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128601750 (eftud2)
Complex C
U5 SnRNP specific factors
128601750 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
128601750
NCBI-ProteinID:
XP_053471067
LinkDB
All DBs
Position
2:complement(32339770..32361187)
Genome browser
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDEDEDVEAEDRDAVEADEDEEDEDQVDGDEDGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLTEQELPATVYEMEFLAD
LMDSSELIRNITLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTER
LIKHAVQERLAITICINKIDRLILELKLPPTDAYYKLRHIVDEVNGMLSTYTTDESLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFSKKAP
NSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGLVDMCVQHIPSPQGGARAKIEHSYTGGLDSDLGEAMTECDPDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagatctgtacgacgaattcggtaattacatcgggccagaactggactctgat
gaggatgaagatgtagaggcagaggacagagatgctgttgaggcagatgaggatgaggag
gatgaagaccaggtggatggtgatgaggatggtggtggcatggaggtagttttgcatgag
gataagaagtattacccgactgcagaggaagtctatgggcctgaagtggagactatcgtc
caagaggaggacacacaaccacttactgagcctattataaagcctgtgaagacgaagcag
ttcactctgacagagcaggagctgccagctacagtttatgaaatggaatttctcgctgat
ttaatggacagctccgagctgatcagaaatatcactctgtgcggacatttacaccacgga
aagacatgctttgtggactgcctgattgaacaaactcatccggaaatccgtaagagagac
gatgcagatctgcgctatacagatattcttttcaccgaacaagaaagaggagtcggtatt
aagagcacacctgtgacaatggtacttcctgactcaagagggaaatcctacctgttcaat
attatggacactccaggtcacgtgaacttctcggatgaggttacagcgggaatcaggctt
tcagatgggattgtgctgttcattgacgctgctgagggggtgatgctgaacacagagcgt
ttgatcaaacatgccgtgcaggagcggctagccataaccatctgcatcaacaaaatcgac
cggctgatcttggagctcaagcttcctcccactgatgcctactacaaactgcgccatatc
gttgacgaggtcaatggcatgctcagcacatatacaactgacgagtctctagtggtgtct
cctcttctgggcaacgtgtgtttcgcttcctcacagtacagcatctgctttacgctcggg
tctttcgccaagatctactctgatacctatggtgacatcaactacaacgagtttgcaaag
agactctggggagacatctacttcaaccccaagacgaggaagttttctaaaaaagccccc
aacagtaactcgcagcggagctttgtcgaattcgtactggagccgctctacaagatcctc
tcacaggtggtcggggatgtggacacttcactgccacgtgtactggatgaattggggatc
cacctgaccaaagaggagctcaaactcaacatccggcctctcctgcgactcgtctgcaac
cgcttctttggggagtttacagggcttgtggacatgtgcgtacagcacatcccatctcct
caagggggcgccagagccaagattgagcacagttacaccggaggactggattcagacctg
ggggaggccatgactgagtgtgaccctgatggtccgttaatgtgtcacaccactaagatg
tacagcacagatgacggagtgcagttccacgcctttggtcgggttctgagcggaacgctg
caggcggggcagccggtgaaagttctcggagagaattacacactggaggacgaagaggac
tcgcagatctgcactgttggacgcctctggatctctgtagccaggtatcagatcgaggtg
aatcgggtccctgctggcaactgggttctaattgaaggctgtgaccagcccatcgtgaaa
acagccaccatcacagagcctcggggcaatgaagaggctcagatcttcaggccgctgaag
ttcaacactgcttcagtcatcaaaatcgctgtggagcctgtaaatccgtccgagctgccc
aagatgttggatggattgagaaaggttaacaagagctacccatcccttacaacaaaggtg
gaggagtctggagagcacgttatcctgggtacaggtgagctctacctggactgtgtcatg
cacgacctgaggaagatgtattcagagattgacatcaaggtagctgaccccgtagtgacc
ttttgcgagacggtggtggaaacgtcctctctcaagtgcttcgctgaaacccccaataaa
aagaacaagatcacgatgattgctgagcctctggagaaaggccttgctgaagacattgag
aacgaggtggtgcagattacatggaacagaaagaagttgggagagttcttccagaccaag
tatgactgggatttgctggcagctcgttctatctgggcttttggacccgacaccactgga
cccaacatcttagtagatgacacactgccctctgaggtggacaaagctctgcttggctca
gtgaaggacagcatcgttcaggggttccagtggggaactagagaaggtcctctgtgtgat
gaacccattcgtaatgtgaagtttaagattctggatgcggtcattgctcaggagccgtta
cacagaggaggtgggcaggtcattcccaccgccagaagagttgtctattccgccttcctc
atggctacacccaggctgatggagccttattactttgtggaggttcaagctcctgctgat
tgtgtatctgctgtttacactgtactggcacgcaggagaggtcatgtgacacaggatgca
ccaatccccggttcgcctctgtacaccatcaaggcattcattcctgcaatcgactctttt
gggtttgagactgatctgcgtacgcacacacagggacaggccttcgcactcagtgtgttc
caccactggcagattgttcctggtgatcctctggacaagagcatcgtgatccggccatta
gagccccagcccgcccctcatctagccagagagttcatgatcaaaactcgtagacgcaag
ggtttgagcgaggacgtcagtatcagcaagttcttcgacgatcctatgttgctggagctg
gccaaacaggatgtcgtgttgaactaccccatgtga
DBGET
integrated database retrieval system
