Ictalurus furcatus (blue catfish): 128602019
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Entry
128602019 CDS
T09387
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128602019 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128602019 (lig4)
Enzymes [BR:
ifu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128602019 (lig4)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128602019 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
128602019
NCBI-ProteinID:
XP_053471500
LinkDB
All DBs
Position
26:complement(9599256..9605342)
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AA seq
918 aa
AA seq
DB search
MEGSSKGERTEETSKSDAASKTFVAAQVPFLDLCTVLENIQKTKHRPDKAKCLKDFLDSW
RRFHAALHKDNPNTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKSGPEA
NKLLNYRAPTTAKGESGDFALTAYFVLKKRCTSQGNLSIKEVNDFLDSVSINNASKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQVFHSDAPELYNVSTDLERVCR
QLHDPSISLSEVSIGLFSAFKPMLAAVANIRQVEKQMGNKPFYIETKLDGERIQLHKDGD
VYKYYSRNSYEYTQQFGSSPLEGSLTPYIHDVFKSHVVNCILDGEMMAYNFTTETFMQKG
SKFDVKRLVEDSDLQTCFCVFDVLLVNDQKFGNEPLKKRYDTLQTVFTPVKGRIQLVQYT
EAKTRQEVINALNEAIDNRDEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGVMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGQKPTVFHTLCRIGSGYTMKELYELGLKLAKHW
KVFRKSSPPPGIWCGTEKPEVYIEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIERIRE
DKEWYECMTLDELNQFRDKASGKLASKHFHFQEDEPEKRKRKLASKPKKTIGIVDHFKAQ
DLSTVTKETDMFEDVEFCVMSGSNTHSKAELEKAVACCGGIVVQNPGKDTYCVIAGVENV
RVKNLIGSNQHDVVWASWLLECVDRKQVLPWQPRHMIHMSPSTKEHFAKEYDCYGDSYYV
DTDEQQLRDVFSRMGTVDMDAVSIASIEQKYGWDDLPTSMFRPYRAYFDRCSDIGDPESL
IKFTCLDFRALEFRFHGGTVVERLEEGISHVVMAGEERLLDLRTHRRLFTKKFKIVRETW
VTDSIKAGHVLNDNDYLV
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggagggctcatccaaaggtgagagaacagaggaaacatccaaaagtgacgctgcatct
aaaacatttgtggctgcacaagtgccatttcttgacctgtgcactgttcttgagaatatt
cagaaaaccaaacatcggccagacaaggccaagtgcttaaaggatttcttagattcatgg
agaaggtttcatgcagctcttcacaaagataatcccaacacgacagattcattctaccca
gccatgcgtcttattgtgcctccttttgaaagggagagaatggcctatggtatcaaagaa
aacatgttagccaaactctacattgaggtcttggggcttccaaaatcggggccagaggca
aataaacttctcaattaccgagcgcctactacagccaaaggagaatctggagactttgcc
cttacagcttactttgtcctcaaaaagagatgcacaagccagggtaatctaagcatcaaa
gaggtcaatgacttcttggactctgtatcgataaataatgccagcaagcagaaagacctt
gtgaagaaaagccttttacatttgattacacaaagctcagctttggaacagaaatggctt
attcgtatgatcctgaaagacatgaaacttgggattagcaaggagaccgttctccaggtt
tttcactcagatgctccagagctctacaatgtctctacggacttggagagggtctgcaga
cagctacatgacccctctatttccttgagtgaggtgtccatcggcctgttttccgccttc
aaacccatgctggcagctgttgccaacatccgccaagtggagaaacagatggggaacaag
cccttctatattgagaccaagctggatggtgagcgcattcaacttcataaggatggggat
gtatacaaatactacagccgtaactcctatgaatacacgcaacagtttgggtcctcacca
ctagagggttccctcacaccatacatccacgatgtctttaaatctcatgttgttaattgc
atcttagatggagagatgatggcttataacttcaccacagagaccttcatgcaaaaaggc
agcaaatttgatgtcaagcggttggtggaagactctgatttacaaacatgcttttgtgtg
tttgacgttctgcttgtcaatgaccagaagtttggaaatgagcctctcaagaagcgttac
gacactctccagacagtcttcacacccgtcaaaggccggatccagctggtacagtacact
gaagccaaaaccaggcaggaagtgataaatgccctcaatgaagctattgacaaccgtgac
gaaggcatcatggtcaaagatcccatgtccatctacaaaccagataaacgtggtgaaggc
tggctgaagatcaaacctgaatatgttgatggcgtgatggatgaattggatttgctaata
gtgggaggctattggggtaaaggcagacggagtggaatgttgtcccactttctctgtgct
gttgctgaaacgccaagtcctggacagaagccaacagtgttccatacactctgtcgaatt
ggatcaggctacaccatgaaagagctctacgagcttggcctgaaactggccaaacactgg
aaggtttttcgcaagagtagccctccaccaggcatttggtgtgggacagagaagccagag
gtttacattgagccaagaaactcggtgatcattcaagtcaaagcggcggagattgttacc
agtgacatgtacaaaactaactgcactctgcgattccccaggattgagaggatccgagag
gacaaagaatggtatgagtgcatgaccttggatgagttaaatcagttccgtgataaagcc
tcgggtaagctggcatccaagcactttcacttccaggaagatgagccggagaagaggaaa
cggaaactcgcatccaagcccaaaaagaccattggcattgttgaccacttcaaagctcaa
gacctgtccactgtcaccaaagagactgacatgtttgaagatgtggaattctgtgtaatg
agcggaagcaacactcattccaaggccgagcttgaaaaggcagtggcctgttgcggaggc
attgtagtccagaaccctggaaaggacacatactgtgtgattgcaggtgttgagaatgtg
cgggtaaagaacctcatcggttcaaaccaacatgatgtagtatgggcttcctggctcctg
gaatgtgtggacaggaaacaggtgctaccatggcaaccacgacacatgatccacatgtcc
ccttccacaaaggaacactttgctaaagagtatgattgctatggagacagttactacgtc
gacacagatgagcagcagctgagggatgtcttcagtagaatgggcactgttgacatggat
gccgtatccatagcttcaatcgagcagaagtacggctgggatgacttgcccactagcatg
ttcagaccttaccgtgcctactttgatcgatgttctgatatcggagatccagaaagtctt
attaagtttacatgtctggactttcgggctctggagtttcgctttcatgggggcacagta
gtagaaagactagaagaaggcatctcgcatgtagtcatggcgggagaagagcgattattg
gacctaaggacacacagacgcctctttactaagaagtttaagattgttcgagaaacatgg
gtgactgattctattaaagcaggacacgtacttaatgacaatgattaccttgtgtaa
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