Ictalurus furcatus (blue catfish): 128609640
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Entry
128609640 CDS
T09387
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ifu03036
]
128609640 (smchd1)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128609640 (smchd1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128609640 (smchd1)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
128609640 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Ferritin-like
Motif
Other DBs
NCBI-GeneID:
128609640
NCBI-ProteinID:
XP_053484250
LinkDB
All DBs
Position
7:9303833..9358476
Genome browser
AA seq
1984 aa
AA seq
DB search
MAESGVPAAETSHVNRSVLVFDCRPENKEASGKMLDIGSMSYKQFLCAVRKEFSISVNES
FVITTTDRREIDSDVYEELSDGKTLHLLKSVDQELVVATEERINYVPHFHTIVQSGQYEY
YASEGQKALPYAFAELIDNALSATAHNPETRSIDIRLFFDESQGGPAVVVMDNGRGMTSK
ELNNWAVYRLSKFNRDDRTFRSDKSGYVRPSAVPRSLNSDISYFGVGGKQAVFYIGQSVR
IISKPGGSPDVHEFVMSKEDFEQKEKNNKEIYCGIIRNRKPADDSHVRVDEERFLQSLVL
EEKGKDSFTAIVITAVQPEHVAYLKKDFDSWTRELAHIYHYYIHGIYGNDMRDTRTPVTM
SNIDIQICLIERSPRLPRLLNLKEIDNDMQTLYINSSVAEFEFKASRGGDAKVEGLLRYH
PFLYDRETYPEDPCAVKPALESDEDCIVLHAEGRGKRPIFECFWNGRLIPYSSVDEFEWC
ERPKKVSSVPLECYNRISGVLFTNDHFKVSTNKLTFMDLELQLRDKETIFTRVLNGQEQR
VQIKREFANWLKECHERHDKQVKFLGFQGVMTRPDIQPKRLQSPWARYKTIVWDGTTYKS
GQKVKTMKTSPIVYGTVSQFLLYGDHEGDVYATGGHVQIVVEPKEVYNEVKIIPITKIDR
QASNADIKENIEKELDKLPDKLRVTWPKKNPWPEKDVRPAGTPMGPIKVEILNKKGETMS
RWPVSSGNSRKFLIDLKVVWHSPDGDITTNSHTGVHSKWEYWFRPMENLNKLGTYTLHLQ
TILSDGDSPMTEWAGTQLPRYTLNFSIKEGSAAAFVTGVVPSPVQVGVPFPLPLQFTDEF
NHPAQPPSGIKPQLECSSLTLSYEETTSKDSTFTIQDLKAMGKLTDHQVKIHTVKVMIPG
LNPESQTFQISVRPGPPHHLVVKPTDEVCIENGTSAGFRVEVQDEFHNVTTHSSLIVRCQ
LFGASDLPADTVDCSNTGSGLLLAKPIQLKNVTTERILTAKFGIPNLKAVACVERRIRIL
PSTRVFRIEVYRQEDDSDDVMVLQNKECINWTAGDTLGSLRFKLYDEGGRQVALTQRLAH
NIKVNWTADLKAAELAKGRLPCVCVPTKTNGEQFYQVAFQDQHTVDTSFTIIPRPDEPER
LKVTLSETTVRMSETLSANIYVEVIDQYGNKTDALNAESMKAVSVSADNLDESALKFDWQ
TSTGTMVVTGVRFAEGLPGPRQLCFKYQNFNGFVSVNVTAGPPTKITLLEAPELPLCVLN
GHGIATPFVLQLCDEWGNPVPDQRVVIAIKTLSPQLKVKSSVMSQPVDAEGKASFILETI
TAMIGDHELEFRGSFSRNKTISGPVVKLCVMPDPNNPVRLCVEYDSEAILRAGDLFPVFK
VTILSEEGGPVKNVSPSSLSMLLWQGLASGSRPPTTAVALKCSKPKDKENDDHFYFRDKE
IPSRVGKYMLQFLFAVENGKSLWSSQIALDIVANKPVKLVPDTPASTPVVSNSSTLANRT
LLQFLCLKIMDKHNNPAGMGINGKVILTVTTVDGDDAEGLPMFENKAKSLTYNLLNGETR
ITELALMENSPGADGAVYTLQFRPVLEGPKSNPTIPPFNLPFRFYNDAENQKAMAAMSKK
KDQLSQSIEVYKAILETNKQLTTELKGQVQDAVSKEAQLKSELKNSGIDISKLTDVESVE
NLIDQMTAHLEVLQNLPRRKCTMPDPFRGSHDVLGKIAHLALVKDDDAAKVISWHILGDM
DCVVTVTTAAAKKIYDDTKGRQQVMPLETIFWKPNNRPLPHIKNGQSLFPPLGNPVFARD
LLFFPDHAESCNMVFTNVLGDTILVDDLDSANHYRKRVVQSKVQCPTLLTRQGDRIRSNG
KFGGLQNKAPPIEKLRGHVFGAPLPQEYHTICKQKELLQQYSVAVQKALKVKDDYDNHVQ
SPQMKQKQQELQQQEKELRDIEKMLTSTPVRTSPGSIKRNLQYEVDESLPAKRIRRKTRK
LLDP
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcgggagttcccgcagcggagacttcgcacgtcaaccggtcggttttggtc
tttgactgtcgccccgaaaataaagaagcttctggaaagatgttggatatcggcagcatg
agctacaaacagttcctgtgtgctgtgcggaaggaattttctatctcagtaaatgaaagc
tttgtgatcactacgacagatcgcagggagattgattcagatgtttacgaagaattatca
gatggaaaaactttacacctgctaaagtctgtggatcaggagttggttgtggcaactgaa
gaacgaattaattatgttccccatttccacaccattgtacagagtggccagtatgagtac
tatgccagcgaaggacagaaggcactaccctacgcctttgctgagcttattgataatgca
ctttctgcaaccgcgcataatcctgaaacaaggagcattgacataagattgttttttgat
gagtctcaaggtgggcctgcagtagtagtgatggataatggtcgtggaatgacctctaaa
gagttaaataactgggcagtttatcgcctttccaaattcaaccgagatgaccgcactttt
aggagtgataaatcaggatacgtgcgtcccagtgcagtccctcgcagtttgaacagtgac
atctcctactttggtgttggaggcaaacaggctgtgttttatataggccagtcagtacgg
atcataagtaagccaggtggctctccagatgtacatgagtttgtcatgtctaaagaagac
tttgagcagaaggaaaaaaacaacaaagaaatttattgtggtataatccggaacaggaag
ccagcagatgactctcatgtgagagtggatgaagagcgtttcctgcaatcactggttctg
gaagagaaaggcaaggacagttttactgctatagttataactgcagtccagccagaacat
gttgcctacttaaaaaaggatttcgactcctggaccagagagctggcgcacatctatcat
tactatattcacggtatttatggaaatgacatgagagacacccgaacccccgtaactatg
tcaaacattgacatccagatctgtctaattgagcggtcccctcgcttgccaaggctgctt
aatctaaaagagatagataatgacatgcagactctttatataaactccagtgtggcagag
tttgagtttaaagccagcagaggaggagatgccaaagtagagggactgcttagatatcat
ccattcctgtatgatcgagaaacctacccagaagacccatgtgcagttaaaccagctcta
gagagtgacgaagattgtattgttttacacgcggagggtcgagggaaaagacccatcttt
gaatgcttttggaatggacgattaattccttattcttctgttgacgagtttgagtggtgt
gaaagacctaagaaagtcagttcagtaccattagaatgttataacaggatatcgggcgtt
ctcttcactaatgatcattttaaagtcagcaccaacaaactgacatttatggatctggag
ttacagctacgtgacaaggaaactatctttacaagagttctgaatggtcaggaacaaaga
gtgcagatcaagcgagagtttgcaaattggttgaaagagtgccatgaaagacacgataaa
caggtgaagttcctcggtttccaaggtgtaatgactcgcccagatatacaacctaaacgc
ctgcagtcaccatgggcccggtacaaaaccatcgtgtgggatggtacaacctacaaaagt
ggacagaaggtgaagacgatgaaaacctcacctattgtttatggcacagtaagtcagttt
ttgctctatggggaccatgaaggcgacgtctatgccactggagggcatgtccaaattgta
gtggaacctaaagaggtgtacaatgaggttaagatcatccccattactaagattgacaga
caggcttcaaatgctgacatcaaggaaaacatcgagaaggaactggacaaacttcctgat
aagttgagagtcacatggccaaagaagaacccatggcctgagaaagatgttagaccagct
gggactcccatgggaccaatcaaagttgagattttgaataaaaaaggggagacaatgtca
cggtggccggtatccagtggtaattccaggaaattcctgattgacctcaaggtggtctgg
cactctcctgacggggatatcacaaccaactctcacactggtgtgcactccaagtgggaa
tactggttcagaccaatggaaaatttgaataagctggggacatacacacttcatctgcag
actatactgagcgacggtgattccccaatgactgagtgggctggaacacaactgccccgt
tatacactcaacttcagtattaaagaaggcagtgcagcagctttcgtgacgggtgttgtt
ccttctcctgttcaggtgggggtacccttcccgttgcctctgcaatttacagatgaattt
aatcatccagctcaacctccttctggcataaaaccccagcttgagtgcagttcattgact
ctgagctatgaagagacaacttcaaaagattctactttcaccatacaagacctgaaagcc
atgggtaaattaaccgaccatcaggtcaagatacacactgtaaaggtaatgatcccaggc
ctcaacccagagtcccagactttccagattagtgtccgtccaggccctccgcaccatctg
gtggtgaagcctaccgatgaagtttgcatagagaatggcacatcagcaggattcagagtc
gaagttcaggatgagttccataatgtcacgacacattccagtcttattgtccgctgccag
ttattcggagcctctgatttgccagctgacactgttgactgcagtaatactggttctggt
ttgctgctagcaaaaccaatacaactgaagaacgtcaccacagagcgcatcctcactgca
aaatttggcattcctaatctgaaggctgtggcttgtgtggagagaagaattcgtattttg
ccaagcacccgtgtcttccgtatagaggtctacaggcaggaggatgattcggatgatgtc
atggtgcttcagaataaggagtgtattaactggacagcaggtgacacactcgggagtttg
cgctttaaactctatgatgaggggggaaggcaggtggctttaacacagagacttgcccat
aacataaaggtgaactggactgcagatcttaaagctgcagaattggcaaagggaagacta
ccatgtgtgtgtgtccccacaaaaacaaatggcgaacagttttatcaggtggcatttcag
gatcagcacactgttgacacatcctttaccataatcccacggccggatgagcccgagcgg
ttgaaggttactctcagtgagacaactgtcaggatgagcgaaactctgtctgcaaatatt
tatgttgaggtgattgatcagtatggcaataagacagatgctctaaatgctgagagcatg
aaagcagtcagtgtgtctgcagataaccttgatgaatccgccctgaaattcgactggcag
accagtacagggacaatggtggtgacaggtgttcgctttgcagaaggcctccctggtcca
aggcagttgtgttttaagtaccagaattttaatgggtttgtcagtgtaaatgtcactgct
ggaccaccgacaaaaatcactctgctggaggcaccagaactgccattatgcgtgttaaat
ggacacggtatagccactccattcgtgctacagttatgtgatgagtgggggaatcctgtt
ccagatcagcgtgttgtcatagcaataaaaactctgtcaccacagctcaaggttaaatct
tcggtgatgtcccagcctgtggatgcagaaggaaaggccagttttatactggagaccata
actgccatgataggagaccatgagctggagttcagaggatcctttagtagaaacaagact
atttctggcccagttgtgaaactgtgtgtgatgcctgatcccaacaaccctgttaggctt
tgtgtcgaatacgacagtgaagccatcttaagagctggagatcttttccctgtgttcaaa
gtaaccatactctctgaagagggtggacctgtgaagaacgtgagtccatccagtctgtcc
atgctgctgtggcaaggcttggcttcaggatcccgccctccaactacggcagtagcactt
aaatgtagtaaacccaaggacaaggaaaatgatgaccacttttacttcagagataaagag
attccttcccgagtggggaagtacatgttgcagtttctttttgctgtagaaaatggcaag
tctctctggagcagtcagattgctctggacattgttgccaataagccagtcaaactcgtc
ccagacactccagcttcaactcctgtggtctccaatagcagcacactagctaatcgcact
cttcttcaattcctatgcttgaagattatggataagcacaataacccagctggtatgggg
attaatgggaaggtgattctgactgtgacaactgttgatggtgatgatgcagaaggtctt
cccatgtttgagaacaaggccaagagtctaacatacaatcttcttaatggggagactcgt
atcactgaattggcacttatggagaatagtccaggggctgatggagccgtgtacacactc
caatttcgtccagtgcttgaaggccctaaatcaaaccccaccatccctccttttaatttg
cccttcagattctacaatgatgcagagaaccagaaggctatggctgccatgagtaagaag
aaagaccagctgtcacagtctattgaagtctacaaagcaattttggaaaccaacaaacaa
ctcacaactgaactcaagggtcaagtgcaagatgcagttagtaaagaggctcaactgaaa
tcggagctcaagaacagtggcatagacatttcaaaattaactgatgtggaatcggttgag
aatttaattgatcagatgactgcacatttggaggtgctgcagaatctgccacgtcgaaaa
tgtaccatgcctgatccattcagaggcagccatgatgtcctaggaaagatagcacacctg
gcactggtgaaggatgatgatgcagcaaaggtcatttcctggcatattcttggtgacatg
gactgtgtggttactgtgacaacagctgcagcaaaaaaaatctacgatgacacaaaagga
cgacaacaagtcatgcccctagaaacaattttctggaaaccaaataacaggccactgccc
cacatcaagaatggtcaaagtttgttccctccgttaggaaaccctgtgtttgctagagat
ctgctgttttttcctgaccatgccgaaagctgcaacatggtcttcaccaatgttcttgga
gacaccatattagtggatgatttggattccgctaaccattaccgcaagagggttgtccag
agtaaggtgcagtgccctactctgctgacacggcaaggggaccgtatccgtagcaacggg
aagtttggtggtttacaaaacaaggctccaccaatagagaagctgagaggacatgtgttt
ggagcaccactgcctcaagaatatcacaccatatgcaagcagaaggagctgctgcagcag
tactctgtagcagtacagaaggcattaaaggtcaaggatgattacgacaaccatgtgcag
agtcctcagatgaaacagaagcagcaggagctccaacagcaagagaaggagctcagagac
atagagaaaatgcttaccagcactcccgtgcgcacttctcccggttcgataaaacgaaat
cttcagtatgaggttgatgagtcccttccggcaaaaaggattaggcgtaaaacccgcaaa
ctactggatccttaa
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integrated database retrieval system
