Ictalurus furcatus (blue catfish): 128611606
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Entry
128611606 CDS
T09387
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128611606 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128611606 (tdg.2)
Enzymes [BR:
ifu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
128611606 (tdg.2)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
128611606 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
128611606
NCBI-ProteinID:
XP_053487227
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All DBs
Position
8:complement(18464249..18472401)
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AA seq
410 aa
AA seq
DB search
MIDVLINNSYLCIHLLFFALSRYHSTQQQFQPEPVPQYSQMVNVPYYQQDVREYTVMNEL
SVHEDPAQISPLHQLPVQPPALPSTPEKGKKRGRPPKQGKNDQTDAEVTVKKAKRTLDRF
NGMSVEEVMAKKLPDVITYNLDILIIGINPGLLSAYKGRHYPNPGNHFWKCLFLSGLTDE
QLNYMHDQTLPEQYGIGFTNMVERTTPGSKDLSNKEIREGGKQLLEKLQKYRPRIAAFNG
KCIYETFCKEIFGVKAKNLEFGLQPYKVPETETVCYLMPSSSPRCAQFPRAQDKVHFYIK
LKELRDQLKGVVQNRELQETEYTFDLVLAKEDAKRMSIKEEQHDPGYEESSTSATLQTCS
FYPANEQGAAHSEPSLALGQVGSNQWTMQPFADQIPDIRYSSNNETSQYF
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgtgttgattaataattcctatctttgcattcatctcctattttttgctctt
tccaggtatcattcaacacaacagcagtttcaaccagagccagttcctcagtacagccag
atggttaatgttccttattaccagcaggatgtcagagagtataccgtaatgaatgaatta
tcagtccatgaagatccagctcagatcagtccgcttcatcagctgcctgtccagcctcca
gctcttccatcaacacctgagaaagggaagaagcgtggaaggccacccaagcagggaaaa
aatgaccaaactgatgctgaagtcactgtgaaaaaagccaaaagaactctggacagattt
aacggcatgtctgtggaagaagtcatggccaaaaaactgcccgatgtcatcacctacaat
ctggacattctgataattggtatcaaccctggattgttgtcagcctataaaggaagacat
tacccaaatccaggaaatcatttctggaagtgcctgttcttatcagggctcacagatgag
caactgaactacatgcatgatcagactcttccggaacaatacggcattggttttactaat
atggtagagaggactacgcctgggagcaaagacctctcaaacaaagaaattcgagaagga
ggcaaacaacttctggaaaagctacagaaatacaggcctcgaattgcagccttcaatggg
aaatgtatttatgaaacattctgtaaagagattttcggagtgaaagctaagaacctggaa
tttggactgcagccctacaaagttccagagacggaaacggtttgttacctgatgccatct
tccagtccacgctgtgctcagttccctcgagctcaggacaaagttcatttctatattaag
ctaaaggaactcagggaccagctgaagggtgtggtgcagaacagggagcttcaggagaca
gagtacacattcgacttagtcttggccaaagaggatgccaaaagaatgtccatcaaagaa
gagcagcatgaccctggctatgaggaaagctctaccagtgcaacgctacagacgtgcagc
ttctatcctgctaatgaacaaggtgctgcacattcagaaccttcattagctttgggacag
gtcggatctaaccagtggacgatgcagccatttgcagaccaaatcccagacattaggtac
tccagcaacaatgagacgtcacaatatttctga
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