Ictalurus furcatus (blue catfish): 128619563
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Entry
128619563 CDS
T09387
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04622
RIG-I-like receptor signaling pathway
ifu04623
Cytosolic DNA-sensing pathway
ifu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128619563 (rigi)
04623 Cytosolic DNA-sensing pathway
128619563 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128619563 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ifu04054
]
128619563 (rigi)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128619563 (rigi)
Pattern recognition receptors [BR:
ifu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128619563 (rigi)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
SNF2-rel_dom
PhoH
ADPrib_exo_Tox
AAA_19
FtsJ
Motif
Other DBs
NCBI-GeneID:
128619563
NCBI-ProteinID:
XP_053499788
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All DBs
Position
15:8460373..8472406
Genome browser
AA seq
937 aa
AA seq
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MYESEKESLRRYRHYIVHFLRPSYIRGFLTTYLEEEYVEKIISKESLSQTEAAQMLLDKM
LDLKEVGWFQGFLDTLRASEYTGLYTAISTWDFHDLETLDPHRKLLDQVEMSVTKNMKPR
ELLPHMSDCLTQRECEEIRAVDEQKGCIAASVRLVESLRHCDKSNWFKVFKLALENCSQN
RALQLLDPDENGNCVQDSEENDVVMATVCFEYREDGESDNLMSNSETSVPEQCVEGTEGG
VASVCERHTEKKLREYQKELATAAYNGLNTIICAPTGCGKTIVAVDICEHHLKKYPQKAK
VVFMATKVEVYEQQYKLFKEHFSKDPDIRVKGVCGDMSDVSLPTLVSNNDVLLMTPQILV
NALQRGDVESLNTFTLLLLDECHNTTGKHPYNNIMSLYIDTKHTTHTHSLPQVVGFTASV
GIGSFKNVPEAENNICQLCANLDARVITTVTENIDELRSFVHTPEKDFFAVPPRTSADPF
ISIIKSIMNNIERLALSVYKIDTVSQVQRGDYGSQMYEQWIVDVQKRCRLLQFTDPEEER
RVCRALYTYTEHLRKYNDALIINEDARTKDALDFMDSFITDISNASSDSTERQLIDLYHA
QRERLLQVAAEEKQNPKLEELQFILDEEYGNNVQTRTVLFVRTRALADALKKWIEETESL
KFLKPGVLIGRGRKSQLTGSGMTLTKQKGALDSFKSSNESKILIATSVADEGIDIPQCNL
VLMYEYVGNVVTMVQVRGRGRAQGSRCFLISSRQERIDKEKLNMEREKLVDAAVKDLQIS
PDRLCAKVDRFQKEDVARRAYVNMSVEKTLTEGSYELKCGKCKKFACFSDDLRVLQASHH
IVLDRSIFQRCLTKPHNKIKTFDNFTKKEKMFCSECNNDWGIIGSYMNIQDLPVLKIESF
TIEDRVTKKPQLFKKWRDVTFRIREFDMTETTRELRT
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagtccgagaaggagtcgctgcggcgctacaggcactacatcgtccatttttta
cgaccctcttacatccggggatttctgacaacatacctggaggaagagtatgttgagaag
atcatatcaaaggagagcttgtcacagacagaggcagctcagatgctgctggacaagatg
ttggacctgaaggaggtcggctggttccagggcttcctggatacgctgcgggcttcagag
tacacaggtctctacacggcgatcagtacgtgggattttcatgatctggaaactctggat
cctcacaggaaactgctggatcaagttgaaatgtctgtcaccaaaaatatgaaacccaga
gagctgctgccacacatgagcgactgtctcacacagcgagagtgtgaggagatcagagca
gtggatgagcagaaggggtgtattgcagcgagtgtgcgcttggtggagagtctgagacac
tgtgataaatcaaactggtttaaagtgtttaaactggcactggagaactgcagccagaat
cgcgctctacagctgcttgaccccgatgagaatgggaattgtgttcaggactctgaggag
aatgatgtagtcatggcaacagtgtgtttcgagtacagggaggacggcgagagtgacaac
ctgatgagcaacagtgagacaagtgtgcctgagcagtgtgttgagggaacagaggggggt
gtggccagtgtgtgtgagagacatacagagaagaagttgagagagtatcagaaagagctt
gctacagccgcatacaacggcctcaacaccatcatctgtgctccaacgggttgtggtaaa
actatcgttgccgtggacatctgtgaacatcacctgaagaaatatccccagaaggccaaa
gtggttttcatggcaaccaaagtggaggtttatgaacaacagtacaaactgttcaaggag
cacttcagcaaggacccagacatcagggtgaaaggtgtgtgtggggacatgtcagacgtg
tctctgcccacccttgtgtccaacaatgacgtgttgctgatgactcctcagattctggtg
aacgctctgcagcgtggtgacgtggagtctctaaacaccttcacactgctgctgctggac
gagtgtcacaacaccaccggcaaacacccgtacaacaacatcatgagcctctacatcgac
accaaacacaccacacacacacactcacttcctcaggtggtgggcttcactgcgtctgtt
ggtatagggagttttaagaatgtgcccgaggctgagaacaacatctgccagctgtgtgct
aacctggatgcccgggtcatcaccacggttaccgagaatattgatgagctgaggtcattt
gtgcacacacccgagaaagacttttttgcggttcctccgcgcacctcagcagaccccttc
atctccatcatcaaaagcatcatgaataacatcgaacggctggctctaagtgtctacaaa
attgacactgtgtcccaggtacagaggggtgattatggcagtcagatgtatgagcagtgg
attgtggatgtacagaaacgctgcagactgctacagttcactgaccctgaggaggagcgc
agagtctgcagagcactgtacacctacactgaacatctcagaaaatataacgatgctctg
atcattaacgaggacgctcgcactaaagacgcactggacttcatggactcgttcatcacg
gacatcagtaacgcctcttcagactccaccgagcgccagctcattgacttataccacgct
cagcgtgagcggctgctccaggtagccgctgaagaaaaacaaaaccccaaattggaggag
ctccagttcatcctggatgaagaatacggcaacaacgtgcagactcgcaccgtgctgttc
gtcaggacccgcgccctcgctgatgctctgaaaaagtggatagaggagacagagtcactg
aagtttctgaagcctggagttctgattggaagaggaagaaaatcacaactgacaggctca
ggtatgactctgacaaaacagaaaggtgcgcttgactcctttaagagctctaatgagagt
aagattctcatcgccacctccgtcgctgacgagggtatcgatatcccacaatgcaacctg
gtgctcatgtacgagtacgtcggcaacgtcgtcacgatggtgcaggttcgaggtcggggc
agagctcagggcagcaggtgttttctgatctccagcaggcaggagcgcattgataaagag
aaactgaacatggagagagagaagctggtggatgcggctgttaaagacctgcagatctca
cctgaccgcctgtgtgccaaggtggaccggttccagaaggaggatgtggcccggagagcc
tacgtgaacatgagtgtagagaaaactctgactgagggaagttacgagctcaagtgtgga
aagtgcaagaagtttgcctgttttagtgatgacctgcgtgtgctacaggcatctcaccac
atcgtgctggatcgctccatattccagcgctgtctcaccaaacctcacaataaaatcaag
accttcgacaacttcaccaaaaaggaaaagatgttttgttctgaatgtaataatgactgg
ggcatcatcggctcctacatgaatattcaggatttgccggtgttgaagattgaaagtttc
accattgaggacagagtcacaaagaaaccgcagcttttcaagaaatggcgtgacgtcacg
ttccgtatacgagagtttgacatgacagagacgacgagggagctgagaacctag
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