Ictalurus furcatus (blue catfish): 128620570
Help
Entry
128620570 CDS
T09387
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128620570 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128620570 (smg6)
03032 DNA replication proteins [BR:
ifu03032
]
128620570 (smg6)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128620570 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
128620570 (smg6)
DNA replication proteins [BR:
ifu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
128620570 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
128620570
NCBI-ProteinID:
XP_053501688
LinkDB
All DBs
Position
16:8189225..8236399
Genome browser
AA seq
1603 aa
AA seq
DB search
MADELDRVRISEAELRAEASSIVTHRDNLKEVQMTSKKHHKEGKRPDLQRYNPSTVQTRC
FKERCEGDVLAISTEPIYTSEESVSDPAIKMPASSLPGSSLKFTSSDCQSELSNFNFDCN
DGSASFSHQHTRRNTVKNSELSSTGTPGSPKLRKMRKPDREIYQPGGRRGQGSRDYGPPK
ELQQVSQEVVKAEDTTCNGLMGLVDQHKDMHLDEEKRNGREIKDSSKKQVLGKQKKLDLS
SSNYAQPTVKSITDKVGKLNINSPTAIVKEKKNEDGGRRCLSGEGSNYRTGRAVGGTGDV
NERKEQERRRSRGGRERGSNQASAKREEGEGDEKCLLTHQLEKNSEPKVEGRFQRDVKGK
DVSQDQNFKNEKHRGKQPIERDGERCRKAQGTQHGTVNCSSKRYSKSDIRRPRIRTYSTS
SASSGTSMDGPVESETRRANSECWVGERGPMYKSHERMIEEMDQATADKSRQRRRTAKDM
SSTDSFEENEGMERDGNGGLKAKADQNDDRTSKRNTRVLRGTLIGGQGGVLRVSLDRQSG
TASGTREDQTKCKNQSHRGRGILVLPTSTELTTSSEPGPQLMCGARSSIGLGRGRGSRGG
STRRLWDPNNPHKKPALSGSQQSQQSSLRQPLYLQHQGGYGPLHFLDTDDEAAGSPPVLQ
GEDFQGQHAATMAYYKYQNTDNPYCYRLPTNATNTPPCYTYSYQLPYQLPGSNGMFPNPG
MAPFYGVYGLSGQVYPPTVITFSPEETEVQTRGELGKLLRMADSQELQLSNLLSRERLSR
EGLDRMAQLRAELLTLYESVILTDIEFSDTQNVDQLLWKNVFYQVIERFRQLLKNQDSDT
APQIRAMLLTILEEGAMFFDSLLLKLQTVFQFKLEDYMDGMAIRAKPLRKTVKYALISAQ
RCMICQGDVARYREQANESANFGKARSWYLKAQQIAPKNGRPYNQLAVLAVYTKRKLDAV
YYYMRSLAASNPILTAKESLMSLFEEAKRKVKSYAEQTEYRLKEDVESGPRGHGTVRGQD
ATRVEMWIRPSVHPGVASRIKGSESGKDSEQERGLRALSASDLNKRFVLSFLHTHGKLFT
KVGMESFPAVATRVLEEFQALLQHSPSPLGSTRMLQIFTVNMFTIYYAQTRDKGQGEARS
VLEEQSTSLGLAMFGLLVQRCTELLKETPAEPIPLEEVNEVEPMVRVSAFPTDLRELLPS
VKVWSDWMLGHPDQWNPPPCNFHGSPDVWQCLAELCNSLASVYHGEIPLFKADADGESDE
LRLLVLDEDRMLAGFVPLLAAPQEPCYIEPQSDTAMAADCKRVTVLKYFLEALCGQEEPL
LAFKGGKYVSIASLTSSSQSTEHKTQSQTNELCQDNSVITEETSLSTSEGELDEGMDEQE
NENDIRELRARRYALVHKLAEQQKRRDKIKAVLQTGSQLELEIRPFYLVPDTNCFIDHLE
GLKKLLTCGTYILVVPLIVITELDGLAKGQECRDVDSTGLAAHARLVQESAKAAVAFLEK
GFEAREPGLRALTSRGNQLESIAFRSEDTSGHKGNNDDVILSCCLHYCQDKAKDFMPAQR
DGPVRLHREVVLLTDDRNLRVKALTRNVPVRDVPAFLSWAKVG
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaactggacagagtacgaatttctgaggctgaattacgggcagaggcgtcg
agtattgttacacatagagacaacttgaaagaagtgcaaatgacaagtaaaaaacatcat
aaagaggggaaaaggccagacctccagaggtacaatcccagcacagtacagacacgctgc
ttcaaggagagatgtgaaggagatgtactagcaatttccactgagcctatatatacttca
gaggagtctgtgtcagatcctgccattaaaatgcctgcaagctctctaccaggttcaagc
ctgaaattcaccagcagtgattgccagtctgaactaagcaattttaattttgactgtaat
gatggcagtgcatctttcagtcatcaacataccaggaggaacactgttaaaaatagtgaa
ctatcaagtactggaacacctggttcaccgaaactacggaaaatgcgcaagcctgaccgt
gagatataccagcctggtgggcgtaggggtcaaggttctagagactatgggcctcctaag
gagttgcagcaggtatcacaagaagtggttaaggcagaggatactacatgtaatgggttg
atgggcttagttgaccaacataaggatatgcatctggatgaggaaaaaagaaatgggagg
gaaatcaaggatagcagcaaaaaacaggtgcttggaaaacaaaagaaattagacttgtct
tcttcaaactatgctcagcctactgttaaaagtataactgataaggtggggaaacttaac
attaacagccccacagccatagttaaagaaaagaagaatgaagatggtggtaggagatgt
ttaagtggtgagggctctaactacagaacaggaagagcagtgggaggaacaggtgacgtg
aatgagaggaaggagcaggaacgacgaaggtccagagggggcagggagagagggtccaat
caagcttcagcaaagagggaggaaggagagggtgatgaaaaatgtctactgacacatcag
ctagagaaaaacagtgagccaaaggtagaaggaagatttcagagggatgtgaaaggaaaa
gatgttagccaagaccagaactttaaaaacgaaaaacacagaggcaaacagccaatagaa
agagatggtgaaaggtgcagaaaagctcaaggaacacaacatggcacggtcaactgttct
tcaaagcgctattccaaatcagacatcagacggcctcgaatccggacatacagcacaagt
tcagccagcagtggcaccagcatggatgggccagtagagtctgaaacacgcagggctaat
tcagaatgctgggtgggagaaagagggccaatgtataagtctcatgaaaggatgattgag
gagatggaccaggccacagcagacaagtccagacaaaggagaaggacagccaaagacatg
tcgtccacagattcctttgaggagaatgagggaatggagagagatggaaatggaggcctc
aaagccaaagcagatcagaatgatgatagaacatcaaaaaggaataccagagtattgaga
ggaactttgattggtggtcaaggaggagtcttgagagtttctctggacagacagtctggc
acagcctcaggaaccagggaggaccaaaccaaatgtaaaaatcaaagtcatagaggcaga
ggcattctggtactcccaacaagcactgaattaaccacttcctcggaacctggacctcag
cttatgtgtggggcaagaagtagcattggcctaggtagaggaagaggcagtcgtggtgga
agtactaggcggttgtgggaccctaataatcctcataagaaaccagctctgtcaggcagc
cagcaatcccagcagtcatctctccgacagccactgtatttgcagcatcaagggggatat
gggccactgcactttctggacactgatgatgaagctgctgggagccctcctgtgctccag
ggggaggactttcagggccagcatgctgccaccatggcttattacaaatatcagaatact
gacaacccttactgctaccggttaccaaccaacgctacaaacacacctccatgctacacc
tattcctatcagctcccataccagttacctggctctaatgggatgttcccgaatccaggc
atggcacctttttatggagtatatggactcagtggtcaagtttacccacctacagtcatc
acctttagcccagaggaaacagaggtacagacaagaggggaactcggcaaacttctgcga
atggctgacagccaggaactccagctcagcaacctgctgtccagggaacgacttagtcga
gaaggactagacagaatggcccagctgagagctgagctcctgacattatatgagagtgta
attctaacagacatcgagttctctgacacacagaatgtggaccaattactgtggaagaat
gtgttttatcaggtcattgagagattcagacaacttctgaaaaaccaggattcagataca
gctccccagatcagggccatgcttctaaccatactggaagagggggcaatgttttttgat
tcactgctgttgaagttacaaactgtattccagtttaaactagaagactacatggatgga
atggcaatacgtgcaaaacctctacgaaagactgtgaaatatgcattgattagtgcccag
cggtgtatgatctgtcaaggtgatgtcgcaagatatagagaacaagcaaatgaatctgcc
aattttggcaaagcacgcagttggtacctgaaagcgcagcagattgcaccaaaaaatgga
cgaccttacaaccagcttgctgtgttggcagtgtacacaaagcggaagctggatgctgtg
tattactacatgcgtagcctggctgccagcaacccaatcctcacagccaaggagagcctg
atgagtctgtttgaagaagccaagcgcaaggttaaatcatatgctgagcagactgagtac
agactgaaggaggatgtggaaagtggcccacgggggcatggaacagttcggggtcaggat
gctacccgggtagaaatgtggatacgcccctctgtgcatcctggagtggcatctcgcatt
aaaggcagcgagtctggcaaagactcagagcaagaacgtgggctgagggcactgagtgca
agtgatctcaataagagatttgtcttgagttttctccacactcatggaaagctcttcact
aaagtagggatggagagcttcccagctgtggccactcgtgttttggaggagttccaggcc
ctgctccagcatagcccttctcctctgggaagtacgcgaatgcttcagatcttcacagtc
aacatgttcaccatctactatgctcagaccagagataaagggcagggagaggcccgttca
gtattggaagaacagtctacttctctgggtttggccatgtttgggctgctggtgcagcgt
tgcactgaacttcttaaagaaacacctgcagagcctattccactggaggaggttaatgaa
gtggagcccatggtgcgagtgtccgcctttccgactgacctgcgagagctccttcccagt
gttaaagtctggtctgactggatgctgggccacccagaccagtggaaccctcctccatgc
aattttcatggcagtcctgatgtgtggcagtgcctggcagagctgtgtaattctttggcg
tctgtgtaccatggtgagattccactcttcaaggcagatgctgatggagagagtgatgag
ttacgactactggtgctggatgaggacaggatgctggctggatttgtccccttgctggct
gctccgcaagagccgtgctatattgagccccaatcagatactgccatggcagctgactgt
aagagagtgactgtgctgaaatacttccttgaagccctatgtggccaagaggagcctctg
ctcgcctttaaaggagggaagtatgtttccatagcatcgctgacatcctccagccaatca
actgaacacaagacccaatcacagaccaatgagctgtgtcaggacaacagtgtaatcact
gaggagacgtcactgtccacatcggaaggagagctggatgaagggatggatgaacaggaa
aatgagaatgatatccgagagctgagagctcggcgctatgctttagttcacaaactagca
gaacaacagaaacggagagacaaaataaaggccgtgctacaaactggaagccagttggag
ctggagatcaggcctttctatcttgtccctgacaccaactgctttatcgaccacctggag
ggattaaaaaagctgctaacgtgtggcacatacatactggtggtaccactgatagtgatt
acagagctggatggcttggctaaagggcaagaatgccgtgatgtagactctacaggttta
gcagcgcatgccaggctggtgcaggaatctgctaaagcagccgtggctttcttggaaaag
ggctttgaggccagagagcctggcctgagagcactcaccagcaggggaaaccagttggag
tcaattgccttccgaagtgaggacacctctggacataagggcaacaatgatgatgtgatt
ctgtcctgctgcctgcattactgtcaagacaaggctaaagactttatgcctgctcagaga
gatgggccagttcgcctgcacagggaagtggttttgctcaccgatgaccgtaatttgcgt
gtgaaagcgctaacccggaatgttccagttcgagatgtccctgccttcctgagctgggct
aaagtgggctga
DBGET
integrated database retrieval system
