Isoptericola halotolerans: UQW22_11540
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Entry
UQW22_11540 CDS
T11139
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
iha Isoptericola halotolerans
Pathway
iha03030
DNA replication
iha03410
Base excision repair
iha03420
Nucleotide excision repair
iha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
iha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UQW22_11540 (ligA)
03410 Base excision repair
UQW22_11540 (ligA)
03420 Nucleotide excision repair
UQW22_11540 (ligA)
03430 Mismatch repair
UQW22_11540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iha03032
]
UQW22_11540 (ligA)
03400 DNA repair and recombination proteins [BR:
iha03400
]
UQW22_11540 (ligA)
Enzymes [BR:
iha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UQW22_11540 (ligA)
DNA replication proteins [BR:
iha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UQW22_11540 (ligA)
DNA repair and recombination proteins [BR:
iha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UQW22_11540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UQW22_11540 (ligA)
MMR (mismatch excision repair)
DNA ligase
UQW22_11540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UQW22_11540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
SnoaL_4
Nlig-Ia
Zn_ribbon_TFIIB
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
WTM14970
LinkDB
All DBs
Position
2503602..2506052
Genome browser
AA seq
816 aa
AA seq
DB search
MTDTTDAAADPTSLDEPAAQRRWAELAALVEEDQRAYYQQDAPKVSDAEYDARLRELEAI
EAAHPALRKPGSPTQRVGGQAAVGFATVEHVERMLSLDNVFSTDELRAWDARVARDLGVE
GGDVGYLSEVKIDGLAIALLYERGHLVRAATRGDGQTGEDITANALRIAEIPQHLAGDDH
PEVVEVRGEVFIPVSAFERLNELQEQLRERAVAEARDRSDSRAVASRAFDEERARVAALR
RFPQFANPRNAAAGGLRQLLDKKSGLEREAGLARVQALRIYAHGVGALQWTEGEHAELAN
QSDAYTLFEQWGIPVSPHNRVVQGIDGVVDMIAYFADHRHDIEHQLDGIVVKVDARADQR
RLGTTSRAPRWATAYKYPPEEVNTRLLAIQVGVGRTGRATPYAVMEPVTVAGSTVRQATL
HNQDVVKAKGVRIGDVVVLRKAGDVIPEILGPVTALADDGHPREDFVMPAECPECGTPLR
PMKEGDVDLRCPNAESCPAQVRGRVEHIGSRGGLDVEALGEVTAAALTQPLEPKEPPLRT
EKDLFDLTVEQLEPIRVVVRDSETGLPREGDGRGESTELTMPDGSTAVVKVVRPFQKKRK
LSKAAERAAVEAGESLYEPSTQATKLLEELERAKTKDLWRLLVSLNIRHVGPVAARALAE
WFGSVAAIRRASREELAAVEGVGPVIADEVLAWFDVGWHQEIVDAWQRAGVRLEIPGHPG
PAVMAEKVAEGPTGPLAGLTVVVTGSLEGYSRDGAKEAVLAAGGKASGSVSKKTDYVVAG
ANAGSKETKARDLGLPILDEDQFTRLLEGGPEALTD
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacacgaccgatgccgccgccgacccgacctcgctcgacgagcccgccgcccag
cgtcggtgggccgagctggccgctctcgtcgaggaggaccagcgggcctactaccagcag
gacgcgcccaaggtgtccgacgccgagtacgacgcacgcctgcgggagctggaggcgatc
gaggccgcacacccggccctgcgcaagccggggtcgccgacgcagcgggtcggcgggcag
gccgccgtcgggttcgccaccgtcgagcacgtcgagcgcatgctgtccctggacaacgtg
ttcagcaccgacgagctgcgtgcctgggacgcgagggtcgcccgtgacctcggggtcgag
ggcggcgacgtcggctacctgtccgaggtcaagatcgacgggctcgcgatcgcgctgctg
tacgagcgcggccacctggtgcgcgcggcgacgcgcggcgacggccagacgggcgaggac
atcacggccaacgccctgcggatcgccgagatcccgcagcacctcgccggcgacgaccac
cccgaggtcgtcgaggtgcgcggcgaggtcttcatccccgtctccgccttcgagcggctc
aacgagctgcaggagcagctgcgggagcgcgcggtggccgaggcgcgcgaccggtcggac
agccgggccgtggcctcgcgtgcgttcgacgaggagcgtgcccgggtcgccgcgctgcgc
cgcttcccgcagttcgcgaacccgcgcaacgcggccgccggcgggctgcgccagctcctc
gacaagaagagcggcctcgagcgggaggccggcctcgcccgggtgcaggcgctgcggatc
tacgcgcacggcgtcggcgccctgcagtggaccgagggcgagcacgcggagctcgcgaac
cagtccgacgcctacacgctcttcgagcagtgggggatcccggtctccccgcacaaccgg
gtcgtgcaggggatcgacggcgtggtcgacatgatcgcctacttcgcggatcaccggcac
gatatcgagcaccagctcgacggcatcgtggtcaaggtcgacgcccgggccgaccagcgt
cggctcgggaccacgagccgcgcgccgcggtgggccacggcgtacaagtacccgcccgag
gaggtcaacacccgtctcctcgcgatccaggtgggcgtcggacggaccggccgcgccacc
ccgtacgccgtcatggaaccggtcacggtggccggctccacggtccggcaggccaccctg
cacaaccaggacgtcgtcaaggcgaagggggtgcgcatcggcgacgtggtggtgctgcgc
aaggccggcgacgtcatcccggagatcctgggcccggtcaccgccctcgccgacgacggc
catccccgtgaggacttcgtcatgccggccgagtgccccgagtgcggcaccccgttgcgt
ccgatgaaggagggggacgtcgacctgcgctgccccaacgccgagtcctgcccggctcag
gtgcgcggccgggtggagcacatcgggtcgcggggcgggctcgacgtcgaggcgctcggt
gaggtgacggcggccgcgctcacgcagccgctggagccgaaggagccgccgttgcgcacg
gagaaggacctgttcgacctcaccgtcgagcagctcgagccgatccgcgtcgtcgtgcgg
gacagcgagacagggctgccgcgagagggggacgggcgcggcgagtcgacggagctgacc
atgcccgacgggtcgacggcggtggtcaaggtcgtccgcccgttccagaagaagcgcaag
ctgtccaaggccgccgaacgcgcggcggtcgaggcgggagagtccctctacgagccctcg
acgcaggcgaccaagctcctcgaggagcttgagcgcgcgaagaccaaggacctgtggcgc
ctcctggtctccctcaacatccggcacgtcggtccggtggcggcgcgagcgctcgcggag
tggttcggctcggtcgcggcgatccggcgcgcgtcgcgcgaggagctcgcggccgtcgag
ggggtcggcccggtcatcgccgacgaggtgctcgcctggttcgacgtcggctggcaccag
gagatcgtggacgcctggcagcgggcaggtgtgcggctcgagatccccgggcaccccggt
cccgccgtcatggcagagaaggtcgccgaggggcccaccggtccgctcgccgggctgacc
gtcgtcgtcaccggatcgctcgagggctacagccgggacggcgccaaggaggccgtcctc
gcggcgggcggcaaggcgtcgggctcggtctcgaagaagaccgactacgtcgtcgccggg
gcgaacgccgggtccaaggagaccaaggcgcgcgacctcgggctgccgatcctcgacgag
gaccagttcacgcggctgctggagggcggcccggaggcgctcacggactga
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integrated database retrieval system
