Ignatzschineria larvae: WMO13_02875
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Entry
WMO13_02875 CDS
T10445
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ilv Ignatzschineria larvae
Pathway
ilv03030
DNA replication
ilv03410
Base excision repair
ilv03420
Nucleotide excision repair
ilv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ilv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WMO13_02875 (ligA)
03410 Base excision repair
WMO13_02875 (ligA)
03420 Nucleotide excision repair
WMO13_02875 (ligA)
03430 Mismatch repair
WMO13_02875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ilv03032
]
WMO13_02875 (ligA)
03400 DNA repair and recombination proteins [BR:
ilv03400
]
WMO13_02875 (ligA)
Enzymes [BR:
ilv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WMO13_02875 (ligA)
DNA replication proteins [BR:
ilv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WMO13_02875 (ligA)
DNA repair and recombination proteins [BR:
ilv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WMO13_02875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WMO13_02875 (ligA)
MMR (mismatch excision repair)
DNA ligase
WMO13_02875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WMO13_02875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
RNA_ligase
HHH
RNA_pol_A_CTD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WZW88342
UniProt:
A0ABZ3C1W9
LinkDB
All DBs
Position
657459..659516
Genome browser
AA seq
685 aa
AA seq
DB search
MSEAIKEQMDTLVETINRLNYNYHVLDETLIPDHEFDALFQELKKLEAEYPQYKDPNSPT
EKVGGKILTGFTEVRHEKPMLSLDNAFNAEDLLSFHQRVLERLGNITQVDYYAEPKLDGL
AVSILYENGRLVQAATRGDGVVGEDITENIRTIRALPHQLTAPFPARLEIRGEVFMRKSV
FEKINTQQLKKGLKPFANPRNAAAGSLRQLDSKITASRELSFYCYGIGLFEGVPESVTPI
EQHSAWLEYVHTLGIPTSQLNEKIDHFQDLVAYYQKIEAERDSLPFEIDGVVIKVDSLQL
QERLGFVSRSPRFAIAVKFPAMEARTRLLDVDFQVGRTGAITPVARLEPVEVGGVVVSNA
TLHNQDEIARLGVMINDEVMIHRAGDVIPKVTRVVIEDRNPECVREIIFPTECPICGSPI
IRLEGEAIARCSGGLTCDAQKLEGLKHFVSRGAMDIDGVGGKWLEILLKEKVIDSIADLY
HLRKDRLLELPRMGERSAEKMLESIEGSKNPPFARFIYALGIREVGEATARTLAQHFSSL
SELMATDEITLMQLADIGPVVAKRIVEFFALPHHRELVQALLDAGIEIQYPAPIQETENS
SSELPLLGETWVITGTLSHYDRSEAKEKLLSLGAKVTGSVSKSTTKLLAGEKAGSKLTQA
EKLGVTVVDEATFLALLADYGLADA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagcaatcaaagagcagatggatactttagtagaaacgattaatcggctcaat
tataactatcacgtgcttgatgagacacttattccagatcacgaatttgatgcgcttttt
caagaattgaagaagcttgaagcggagtatccgcaatataaagatcccaacagcccaaca
gaaaaagtgggcggaaaaattttaacgggctttacagaagttcgtcacgaaaaaccgatg
ctctctctcgataatgcgtttaatgctgaggatttgttaagctttcatcaacgagtgtta
gagcggttggggaatattacgcaagttgattactatgcggagcctaaattagatggttta
gcggtgagtattttgtatgaaaatggtcgtttagtgcaagcggctacccgcggagatggc
gttgtaggggaagatattaccgagaatattcgtactattcgagcactgccacatcaatta
acagcaccttttccggcaaggcttgaaattcgcggcgaagtctttatgcgtaaatctgtc
tttgaaaagatcaatactcaacagctgaaaaaaggcttaaaaccctttgctaatccgcgt
aatgctgccgcagggtcgctacgtcaacttgactcaaaaattacagcaagtcgcgaattg
agtttctactgttatgggattggattatttgaaggggttcctgaatctgtgacacccatt
gaacaacattctgcttggttagaatatgttcataccttaggaattcccacttctcaactc
aatgagaagatcgaccatttccaagatctcgttgcctactatcaaaaaattgaagcagag
cgggattcgctaccttttgaaattgatggcgttgtgattaaagttgattcattacagtta
caagaacgcttaggatttgtctctcgttcccctcgttttgcgattgccgtaaaattcccg
gcaatggaagcgagaacgcgattgctagatgtggattttcaagtgggaagaaccggggct
attacgccggtggcacgtctagagccggtggaagtgggcggtgttgtagtatcgaatgcc
acgcttcataatcaagatgagatcgcccgtttaggcgtgatgattaatgatgaagtgatg
attcatcgagccggcgatgtgattcctaaagtgacacgcgttgtgattgaagatcgtaat
cctgagtgtgtaagagagattatcttccccacagaatgcccgatatgtggctctccgatt
attcggttagaaggggaagcgattgcccgctgtagtggtgggctaacctgtgatgcgcag
aagctagagggattaaaacactttgtttctcgcggggcgatggatatagatggtgtcggt
gggaagtggcttgagattttgctcaaagagaaagtgattgattctattgccgatctctat
catttgcgcaaagatcgtctgctggaacttcctcgaatgggggagcgttcggctgaaaag
atgctcgagagtattgaaggcagtaaaaatcccccttttgcccgctttatctatgcgctc
ggtattcgggaagtgggtgaagcaactgctcgaaccttagcgcagcacttttcatcatta
tctgagttaatggcgacagatgagatcacattgatgcagttagctgatattgggcctgtg
gttgctaagcgtattgtcgaattctttgcgctaccacatcaccgtgagttggtgcaggca
ctattagatgccggcattgagattcaatatcctgcaccgatccaagaaacagaaaatagt
agtagtgagttaccactcttaggtgaaacgtgggtgattaccgggacgttaagtcattat
gatcgcagtgaggcaaaagagaaactcttaagccttggggcgaaagtcaccggcagtgtg
tcaaaatctacgactaaactacttgccggtgaaaaggccgggagcaagctcacacaagcg
gagaaattgggcgtaaccgttgtcgatgaagccacatttttagccctgttagcggattat
ggtttagcggatgcataa
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