Iamia majanohamensis: PO878_18035
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Entry
PO878_18035 CDS
T08795
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ima
Iamia majanohamensis
Pathway
ima03030
DNA replication
ima03410
Base excision repair
ima03420
Nucleotide excision repair
ima03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ima00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PO878_18035 (ligA)
03410 Base excision repair
PO878_18035 (ligA)
03420 Nucleotide excision repair
PO878_18035 (ligA)
03430 Mismatch repair
PO878_18035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ima03032
]
PO878_18035 (ligA)
03400 DNA repair and recombination proteins [BR:
ima03400
]
PO878_18035 (ligA)
Enzymes [BR:
ima01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PO878_18035 (ligA)
DNA replication proteins [BR:
ima03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PO878_18035 (ligA)
DNA repair and recombination proteins [BR:
ima03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PO878_18035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PO878_18035 (ligA)
MMR (mismatch excision repair)
DNA ligase
PO878_18035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PO878_18035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
WCO66401
LinkDB
All DBs
Position
complement(3834747..3837047)
Genome browser
AA seq
766 aa
AA seq
DB search
MAQGSDGDDQDRAADAADRAAALRAEIAVHDERYHQLDAPTIADADYDALVRELRDLEEA
HPDLVTEDSPTQRVGAAPSTLFAPVEHRSPMMSLDNAFDAESLAAWGERLERRLGAGPDD
DPVDYVCELKIDGVAISLVYEDGHLVQAATRGDGRVGEDVTANVRTIGDVPEDLPAGAPR
LLEVRGEVYMSRSAFARLQATQEELNRERLADGRKPTPVAVNPRNAAAGSLRQKDSAVTA
SRELSMWCYQLGEVDGGPAFSRHRETLEFLGEAGLPVNPEITLLPTLDEVLEYCVRWRDD
RLRLDYDIDGAVVKVDDLATRATLGFTARAPRWAVAYKFPPEERTTRLRSIEVSVGRTGR
TTPFAQLEPVFVGGANVSQATLHNQDQVAVKDVRPGDVVVVRRAGDVIPEVVGPVLPRDD
PDRPAWEFPTTCPCPRASTLVRPEGESDTRCVDPECPFQRAGSIEHFAGRGSMDVEGFGE
QRVRLFLDLGLVADIADLYRIDWDRLAALRALVTDWATAAVAVARERTGDDAARLDVVDT
SDLSATTPDGADDLLGSELVADLVADPARFRSTADTLRGLGEEAVANLQAAIAATRDRPL
AKLLVGLNIRHLGPAGSEALASTLGHIDAIEAAGEEAMAAVEGVGPVIAAAVRAWFDDEA
NRAVVDKLRAAGINLEGPERPDVEPVLLGRAVVVTGTLEGWSREEAAEAIKARGGKSPGS
VSGKTYAVVVGAEPGASKLTKAEDLGVPVLDEAAFATLLETGELPG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtggcccagggcagtgacggagacgaccaggaccgggcggccgacgcggccgaccgggcc
gccgccctgcgggccgagatcgcggtccacgacgagcgctaccaccagctcgacgcgccg
accatcgccgacgccgactacgacgcgctggtccgcgagctgcgcgacctggaggaggcc
caccccgacctggtcaccgaggactcgcccacccagcgggtgggggccgccccctcgacg
ctcttcgccccggtcgagcaccggtccccgatgatgtcgctcgacaacgccttcgacgcc
gagagcctggccgcgtggggcgagcgcctggagcgccgcctcggcgccggccccgacgac
gacccggtcgactacgtgtgcgagctgaagatcgacggcgtggccatctcgctcgtctac
gaggacggccacctggtccaggccgccacccggggcgacggccgggtgggcgaggacgtc
accgccaacgtgcgcaccatcggcgacgtgcccgaggacctgccggccggcgcgccccgc
ctgctggaggtccggggcgaggtctacatgtcccgctccgccttcgcccgcctgcaggcc
acccaggaggagctgaaccgggagcggctggccgacgggcgcaagcccacgccggtggcc
gtcaacccccgcaacgccgcggccggctccctgcgccagaaggactcggccgtcaccgcg
tcccgggagctgtcgatgtggtgctaccagctgggcgaggtcgacggcgggcccgccttc
tcccgccaccgcgagaccctcgagttcctgggcgaggccggcctgccggtcaaccccgag
atcaccctgctgcccacgctcgacgaggtcctcgagtactgcgtgcgctggcgggacgac
cggctccggctcgactacgacatcgacggcgcggtggtgaaggtcgacgacctggccacc
cgcgccaccctcggcttcaccgcccgggcgccccgctgggccgtggcctacaagttcccg
cccgaggagcgcaccacccggctccgctcgatcgaggtctcggtgggccgcaccggacgc
accaccccgttcgcccagctcgagcccgtgttcgtcggcggggccaacgtgagccaggcg
accctgcacaaccaggaccaggtggcggtgaaggacgtccgccccggcgacgtggtggtg
gtgcgccgggccggcgacgtcatccccgaggtggtggggccggtgctgccccgcgacgac
cccgaccgccccgcctgggagttccccaccacctgcccctgcccgcgggcgtcgaccctc
gtgcgccccgagggcgagagcgacacccgctgcgtcgaccccgagtgccccttccagcgg
gccggcagcatcgagcacttcgcgggacggggctcgatggacgtcgagggcttcggcgag
cagcgggtccggctcttcctcgacctcggcctggtcgccgacatcgccgacctctaccgc
atcgactgggaccggctggccgcgctgcgggccctggtcaccgactgggccaccgcggcg
gtggccgtggcccgcgagcgcaccggcgacgacgccgcccgcctcgacgtggtcgacacg
tcggacctctcggccaccacccccgacggggccgacgacctgctcggctccgagctggtg
gccgacctggtggccgacccggcccggttccgctccaccgccgacaccctgcgggggctg
ggcgaggaggcggtggccaacctgcaggcggccatcgccgcgacccgcgaccggccgctg
gccaagctgctcgtcggcctcaacatccgccacctgggcccggccgggtccgaggccctg
gcgtcgacgctgggccacatcgacgccatcgaggcggccggcgaggaggccatggccgct
gtggagggcgtgggcccggtcatcgccgccgcggtgcgggcctggttcgacgacgaggcc
aaccgggcggtggtcgacaagctccgcgccgcggggatcaacctggagggcccggagcgg
cccgacgtcgagcccgtgctcctgggccgggccgtggtggtcaccggcaccctcgagggc
tggagccgggaggaggcggccgaggccatcaaggcccgggggggcaagagcccgggcagc
gtgtcggggaagacctacgccgtggtggtcggggccgagcccggggcgtcgaagctcacc
aaggccgaggacctgggcgtccccgtcctcgacgaggccgccttcgccaccctgctcgag
accggcgagctgccgggctga
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