Imperialibacter sp. tig00000051: ACMVP2_25330
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Entry
ACMVP2_25330 CDS
T11152
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
imp Imperialibacter sp. tig00000051
Pathway
imp03030
DNA replication
imp03410
Base excision repair
imp03420
Nucleotide excision repair
imp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
imp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACMVP2_25330 (ligA)
03410 Base excision repair
ACMVP2_25330 (ligA)
03420 Nucleotide excision repair
ACMVP2_25330 (ligA)
03430 Mismatch repair
ACMVP2_25330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
imp03032
]
ACMVP2_25330 (ligA)
03400 DNA repair and recombination proteins [BR:
imp03400
]
ACMVP2_25330 (ligA)
Enzymes [BR:
imp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACMVP2_25330 (ligA)
DNA replication proteins [BR:
imp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACMVP2_25330 (ligA)
DNA repair and recombination proteins [BR:
imp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACMVP2_25330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACMVP2_25330 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACMVP2_25330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACMVP2_25330 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
F55H2_N
Zn_ribbon_NUD
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
XOY59812
LinkDB
All DBs
Position
complement(5944657..5946711)
Genome browser
AA seq
684 aa
AA seq
DB search
MTKEEAREEIARLSQELNYHNRLYYQEHRTEISDFDFDTLLKKLQELEAAFPEFVDENSP
TLRVGGTVTKDFETVEHKYPMLSLGNTYSEQELRDFDQRVSKALEGAPYEYFCEMKFDGV
ALSLTYENGRLSRAVTRGDGTKGDDVTNNARTIHSIPLRLGKDGDYPSAFEVRGEVFLPR
KMFDKINAEKEDIGEPLLANPRNTASGTLKQQDSAAVAKRRLDCYVYSLLGVESLIQTHE
EAVHLLEKWGFNVSPTYGKCATIDDVLKYIAEWETKRLDLPLDTDGVVIKVNAITQQRLL
GFTAKSPRWAIAYKYKTQSAITELLDITYQVGRTGAVTPVAELKPVLLAGTTVKRASLHN
ANEIARLDLRVGDMVFVEKGGEIIPKVTGVDTAQRKPGSQAVVYLDKCPECGTPLVRTEG
EAVHYCPNTDGCPPQIQGRIEHFIQRNAMNIESMGPETIAGLLSHSLIKDPADIYFLTFE
QLNGLEFSSYSEKKGDTVTRSLREKSARNIIDAIEKSKEQPFENVLFGMGIRYVGRTVAE
KLATHFGGIEEISKASYEQLLEAPEIGERIAQSVIDFFGSGKNADFIDKLSAAGLKLKTE
GGAFVAASDKLAGQTFVISGVFKGFERDDLKNIIKQNGGKVVSSVSAKLNFLVAGDNMGP
AKLEKANELGVKIISEDDFLKMIN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggaagaagccagagaagaaatagcaaggcttagccaggagctaaactaccac
aaccgcctttactaccaggagcacaggactgaaatctccgattttgattttgacacatta
ttaaaaaagctccaggagttggaagctgcatttcctgagtttgtggacgaaaattctccc
acacttcgggttggtggcactgtcaccaaagattttgaaaccgttgagcataagtatccc
atgctttcgctgggaaacacctattctgagcaggaactccgtgattttgatcagcgggta
tccaaagcattggagggtgcgccttacgagtatttctgcgaaatgaagtttgatggtgtt
gcactcagccttacctacgaaaacggtcgtctttcccgggccgtgaccaggggcgacgga
acaaagggcgatgatgtgaccaacaatgccagaaccatccacagtatcccgctgcgactt
ggcaaagacggagactatccatcagcgtttgaagtgcggggcgaagttttcctgccccgg
aaaatgttcgacaagatcaatgctgaaaaggaagacataggcgagcctcttttggctaat
ccaagaaatactgcatcaggcacgctaaaacagcaggattcagcagcagtggccaagcgc
cgcctcgactgttacgtttactcactgcttggcgtagaaagccttatacaaacacacgag
gaagcagtgcatttactggaaaagtggggattcaacgtgtcccctacctacggaaaatgc
gctactatagacgatgtgctgaagtacattgctgagtgggaaacaaaaagacttgactta
ccgctcgataccgacggcgttgtgattaaagtgaatgcaatcactcagcagcggctgcta
ggctttacagccaaaagtccccgctgggccattgcctacaaatacaaaacacaaagtgct
atcaccgagttgctcgacatcacctatcaggtcgggaggaccggcgcagtaactccggtg
gcagaattaaaacccgtgctgctggctggcaccactgtgaagcgggcctcgttacacaat
gccaatgaaattgcccgactcgacctgcgtgttggcgacatggtgttcgttgaaaaggga
ggcgagattatccccaaagtaacgggtgttgacacggcacaaaggaaaccaggcagccag
gcagtagtttatcttgataagtgccccgagtgtggaacgccgctggtgagaaccgagggt
gaggcagtgcactattgccccaacaccgacggttgcccaccgcagatacaaggccgcatc
gagcatttcattcagcgcaatgccatgaatatcgaaagcatggggcctgaaactattgct
ggcctgctcagtcacagcctgatcaaagacccagcggatatctatttcttgacctttgaa
caacttaatggcctggagttttccagctattcggagaaaaaaggcgatactgttaccaga
agcctgagggagaaatctgcccgcaacattatcgatgctattgaaaagtcgaaggaacag
cctttcgaaaatgtccttttcggcatgggcatcaggtatgtgggaagaacagtagctgaa
aaactggcgacgcattttggaggcatcgaggaaatcagcaaggccagctatgaacagctg
ctggaggcaccggaaattggcgaaagaattgctcagtcggtgattgacttttttggctca
gggaaaaatgccgacttcattgacaaactttctgcagccgggttgaaactgaaaacggaa
ggtggggcattcgttgctgccagcgacaaactggccggacaaacttttgtcattagcggc
gtgttcaaaggttttgaacgtgacgatttgaagaacatcattaaacaaaatggtggcaag
gtcgtatcctcagtctcggccaagctcaactttctggtggctggtgacaatatggggcct
gcaaagcttgagaaggccaacgagcttggtgtgaaaattatttcagaagacgacttccta
aaaatgatcaactaa
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