KEGG   Ipomoea nil (Japanese morning glory): 109153272
Entry
109153272         CDS       T04663                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
ini  Ipomoea nil (Japanese morning glory)
Pathway
ini03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ini00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109153272
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ini03021]
    109153272
Enzymes [BR:ini01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     109153272
Transcription machinery [BR:ini03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     109153272
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 109153272
NCBI-ProteinID: XP_019156683
LinkDB
Position
Un
AA seq 1448 aa
MEHDLHIEYPVPSGVLRGIKFNILSESDAAKISAKVIELVNEVTDPALGLPNPVSECRTC
GAKDVKGCEGHFGLIKFPFTIISPYFISEAARILNKICPGCKSARCDKVKRVDSTSMRQQ
HGNCKYCDGTLKDYPQMRFRLSPKDMFGKPAIIAEVSEKLLRKFPNTTSGGSLASDYWDI
IPHDAGQDESSRQSKKRVLSYAQVYSLLKDVDSRLLEAFLKSRTSIFLSCFLLTPNCHRV
TELGPHMLFDESNRLYRKLIDFRGAANDLSMHVIDRIKLSKLRAERQAIIDPAISTSGLK
FLKELLIAKRSNHAFRLVVVGDPQIKLSEIGIPCHVAESLHVAEHLNTWNSEKLTEHCDL
MILQKGWVLVRRNDGLVRVSMLDKLQKGDTIYRPLVDGDIVLINRPPSIHQHSLIALSVR
ILPITSALSINPLICSPLRGDFDGDCLHGYVPQSMDCRVELRELVALDKQLLDGQSGRNL
LSLSHDSLTAAHLILEDGVLLNQCQMQQLQMSCPRQFSLPAIFKALSKGSCYWTGKQLFS
LLLPSDFDYFFPSNGVCIRKGEIMSSNGSSWLRDTDGNLFRSLVKHYGDQVLHFLFAAQE
VLCEWLSMRGLSVSLSDLYLSSDPSTRKNMVTEISCGLKEAERLSYVTLLMVDYTRDFLV
GRSEGNQNSKIFDVERLSIEKQKSAALSQASVCAFKDVFWDIQNLLYQYANKGNSFLAML
KAGSKGNLLKLVQQSMCLGLQHSLIPLSFQIPHHLSCGAWNDEKNHPHDIMEYSGTYIPC
AVVENSFLTGLNPLECFVHSLTTRESSFSGHADVSGTLTRKLTFFMRDLYIGYDGTVRNP
YGNQVVQFSYYSREKSDPTIAPEDAVKSHSHASNAVGGHPVGSLAASAISEAAYSALDQP
ISALESSPLLNLKKVLESGVRKSSGEKSASMFLSKMLGRWAYGFEYGALEVKNHLERLLF
SDLVSEVMICFSRETSRSSRTSPWVCHFHINKEIAKRRRLKLESITDALNMSYTATKVKA
KVELPNLQITCTDCCVADTSKQDPKSCITVAIVGITKDSYPELDILRDFVIPFLLRTVVK
GFSAFKKVDILWREEAPILSKSSIRSSGELYLRVLMSENCDRTKFWSVLVDSCLQIMTMI
DWERSHPDDIHDISVAYGIDVAWKCFLRDLSSAVSDTGKIILPEHLVLATDCLSSSGQFL
ALSAKGLSFQRKENGVSTPFTQACFSSPGESFLKAAKMGLSDDLRGTAEALSWGKIPPVG
TGFQFDVLYSGKGFEPSETTDVYNLLGKHAALQKEKMMLYPEESKEIVSKPLAQRLCKYG
DFYSEGENSLLPKAISSSFTLNDIQRLSKALRNILYTYDINDHLKEADKSVVMRALYFHP
RRSEKIGTGAHEIKVGQHKGHANSRCFLLVRSDGTVEDFSYHKCVHHALKLIAPKKAKTY
HSRWLNGY
NT seq 4347 nt   +upstreamnt  +downstreamnt
atggagcatgatctacatatagagtacccggtgccatcaggtgtcttgaggggaattaag
tttaatattctatctgagtcagatgctgccaaaatttcagctaaggtaatagaactagtg
aatgaagtaacagatcctgcattaggactgccaaatccagtttctgaatgccgtacatgt
ggtgcaaaagatgtaaaaggatgtgaaggccattttggtttaataaaattccccttcaca
attatcagtccatacttcatatcagaagctgcacggattctcaataaaatttgcccagga
tgtaaatcagctcgatgtgataaggtcaagagggttgattccacatccatgcgtcagcag
catggtaattgcaagtattgtgatggaactttaaaagattatccacaaatgagatttaga
ttatctcccaaagacatgtttggaaagcctgcaattatagctgaagtgagtgaaaaattg
ttgaggaagtttccaaatacgacttcaggaggaagtttggcttctgattattgggatata
attccacatgatgcagggcaagatgaaagttctcgacaatcaaaaaaacgagttctatca
tatgcacaggtttatagcttgctgaaagatgttgattcaagacttcttgaggcatttctc
aaaagtagaacttcaatctttctcagttgtttccttttgacccctaactgtcatcgtgtc
acagaattagggcctcatatgctatttgatgaaagtaacaggctttacagaaagctgatt
gactttagaggggcagccaatgacttaagtatgcacgttattgaccgcatcaaactttca
aagcttcgtgctgaaagacaagctattatagaccctgcaatcagcacatctggtctgaag
tttttgaaagaacttctcattgcaaagagaagtaatcatgctttccgcttggtggtagtt
ggcgatccacagataaagctgtctgaaattggtattccatgtcatgttgcagagagccta
catgtagctgagcatttaaatacatggaattcagaaaagttaactgagcactgtgatctc
atgattcttcagaagggatgggtccttgttcgcagaaatgatggcttagttcgtgttagt
atgctggacaagttgcagaaaggagataccatatatagaccacttgttgatggagatatt
gtgttaataaatagacctccttctattcatcaacattcccttattgctctgtctgtcaga
attcttccaataacttcggctctttctataaatccccttatatgttctcctcttcgtggg
gactttgatggtgattgccttcatggttatgttccacaatcaatggactgcagagtggag
cttagggagcttgttgctctagacaaacaattgcttgatggacagagtgggagaaacctt
ttgtcactaagtcatgacagcttgactgcagctcatttgattctggaggatggggttctc
ttgaaccagtgtcagatgcaacagctgcagatgtcttgtcctcgacagttctcactgcca
gctatcttcaaagcattatcaaaaggctcttgttattggactggaaagcagttattcagt
ctgctcttgccatcagattttgattatttttttccatctaatggtgtatgtattaggaaa
ggagaaattatgtcttctaatggatcttcttggctacgtgacactgatggaaatcttttt
cgtagtcttgtcaaacattatggagatcaggttcttcatttcctgtttgctgcacaggaa
gttttatgtgagtggttgtcaatgaggggattaagcgtttccttgtctgatctttatctc
tcttctgatccatccacccgaaagaatatggttactgaaatttcatgtggtttgaaagag
gcagagagactttcttatgttacacttctcatggtggattatactcgagatttccttgtt
ggaagatctgaaggaaatcagaattcaaaaatttttgatgttgagcgattgtctattgag
aaacagaagtcagctgcacttagtcaggcttctgtttgtgctttcaaagatgtattctgg
gatatccaaaacctgctttatcagtatgcaaacaagggtaactcattcctggctatgtta
aaggctgggagcaagggtaaccttctgaaattggtacagcagagcatgtgtcttggtttg
cagcattctctgattccattgtcttttcaaatcccccatcatctttcttgtggtgcatgg
aatgatgaaaagaaccatcctcatgatattatggaatactctggtacttacatcccatgt
gctgtggtggaaaattcttttcttacaggtttaaatcctctggagtgctttgtgcattcg
ttaacaactagggaaagttcttttagtgggcatgctgatgtttctggtactttgactcgt
aaactcacatttttcatgcgggacctttacattggatatgatggaacagtgcgaaatcct
tatggaaatcaagttgtgcagttttcttactatagtcgagaaaaatctgatcccactata
gcccctgaagacgctgtaaaaagccattctcatgcatcaaatgcagtgggtggccatcct
gttggttcattggctgctagtgccatttccgaggctgcatacagtgctttggatcaaccc
attagtgcgcttgagtcatcacctctgctgaaccttaagaaagtactggagtcaggggta
agaaaaagtagtggtgaaaaatctgcatcaatgttcttgtcaaaaatgcttggaaggtgg
gcttacggttttgaatatggagctttagaagtaaaaaatcatttggaaaggcttctgttt
tcggaccttgtttctgaagtaatgatatgtttctcacgagagacaagcagaagcagccgc
actagtccttgggtttgccattttcacataaataaggaaattgcaaagaggagaagacta
aagttagaatccattactgatgctcttaacatgagttacacagccactaaagtaaaagca
aaagttgaacttccaaatctgcagataacatgcacggattgttgtgttgctgacacatca
aagcaagacccaaaatcttgcattacagttgctattgttggaattactaaagattcatat
ccggagctggatatccttcgtgattttgtgataccattcctccttagaacagttgttaaa
ggattctctgcattcaaaaaggttgatatcttatggagggaggaggcacccattttatcc
aagtcttctataaggtcttctggagaactttatttgcgggttttgatgtctgaaaactgt
gacagaactaaattttggagtgtccttgtggatagttgccttcaaataatgactatgatc
gactgggaacgcagtcatcctgatgatattcatgatatctctgtagcctatgggatagat
gttgcttggaagtgttttctaagagatctaagttctgcagtgtctgatactggcaagatt
atcctcccagaacacttggtacttgcaactgactgtctgtcatcttcgggacaatttctt
gctttgagtgcaaaaggcctgtcatttcaaagaaaagaaaatggtgtttctacacccttc
acgcaagcatgcttttcaagtcctggagaaagttttcttaaagcagccaaaatgggattg
tcagatgatcttcgagggactgcagaagctttatcttggggaaagattccacctgttggt
actggtttccagtttgacgttttatactctgggaaggggtttgagccttctgaaaccact
gatgtgtataatctgctgggtaagcatgctgcactccagaaggagaaaatgatgctctat
cccgaggaaagcaaagaaattgtcagcaagcctcttgctcagcgtctatgtaaatatggt
gatttttattcagagggagaaaatagtttgttaccaaaagcaatttcgagttcctttacg
ttgaatgacattcagaggctctctaaggcattgaggaatatcttatacacgtatgatatt
aatgatcatttgaaagaagctgacaagtctgttgtgatgagggccttatattttcatcct
cgaaggagtgagaaaattgggactggagcacatgaaatcaaggttggtcagcataaagga
catgcaaattcccgctgcttccttttggtacgttcagatggaacagtcgaagacttttct
tatcacaagtgcgtacatcatgctctcaagctaattgctccaaagaaggcaaaaacttac
cattcgcgatggttgaatgggtactga

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