Ipomoea nil (Japanese morning glory): 109161422
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Entry
109161422 CDS
T04663
Name
(RefSeq) ABC transporter I family member 21-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109161422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109161422
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109161422
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
ORC-CDC6-like
AAA_29
nSTAND3
NACHT
AAA_28
AAA_33
AAA_15
AAA
AAA_22
AAA_23
AAA_16
AAA_5
AAA_14
PduV-EutP
AAA_7
AAA_24
AAA_18
AAA_25
Zeta_toxin
SRP54
AAA_30
FtsK_SpoIIIE
DUF3584
Motif
Other DBs
NCBI-GeneID:
109161422
NCBI-ProteinID:
XP_019165366
LinkDB
All DBs
Position
Un
AA seq
336 aa
AA seq
DB search
MFSRRVNIQSLEEVVEVVREETLLRRLLYNTPPETPLIEYRRPREKETKMAAESNSIQVS
GMQFGYDFQTPLFFDFSLKVSPGSRCLLVGANGSGKTTLLRILAGKHLVGGKDVVRVLNF
SAFHDTHLVCSGDLAYLGESWSKNVGSAGEIPLQGDFSAEHMIFGVDGVDPIRREKLIEL
LDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEVTVDLDVVARMDLLDFFKEECEQ
RGATVVYATHIFDGLETWATDLVYVQDGVLKRSEKLSELAELKTKPNLLSVVETWLRSET
PIEKKKASKNPSAVKTTSSPFDASPFRSSRHMAYYR
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtagacgtgtaaacattcagtccctggaagaggtcgttgaggttgttagagag
gagactttacttcgtagactgctttataacacgccgccggaaaccccattgatcgaatac
cggaggccgagggaaaaagagacgaaaatggcggcagaatcaaacagtatacaagtgagt
ggcatgcaattcgggtacgatttccaaacccccttgttcttcgacttcagcctcaaggtt
tctcccggatctcgatgtctgctcgtcggcgcgaatggatccgggaagacgactctgctc
agaatattggcggggaagcatttggtgggtgggaaagatgttgtgcgggtgctaaatttt
tcagctttccatgacacacaccttgtctgcagtggtgacctagcctatcttggagaatct
tggagcaaaaacgttggctctgctggggaaatcccactccagggagacttctcagctgag
catatgatatttggagttgatggagttgatcctattaggcgagagaagctgattgaactg
ctagatattgatctccaatggcggatgcacaaggtctctgatggtcagcggcgtagagtg
cagatctgtatgggccttcttcatccctacaaggttcttttgctagatgaggttacggtt
gacctagatgttgttgcgaggatggatttacttgatttttttaaggaagaatgcgagcag
agaggtgctacggtagtgtatgcaacgcatatatttgatggattagagacatgggcgaca
gatctagtctacgttcaagatggcgttttgaagaggtccgagaagttatcagaacttgcc
gagctgaagactaagcccaatttgctctcggtggtggagacctggcttcggtctgagacc
ccgatcgagaaaaagaaagccagcaagaatccgagtgcagttaagacgacatcttccccg
tttgatgcttctccctttcgctcgtctagacacatggcgtattatcgctga
DBGET
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