Intestinibacillus sp. NTUH-41-i26: RX717_09075
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Entry
RX717_09075 CDS
T09461
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
int
Intestinibacillus sp. NTUH-41-i26
Pathway
int03030
DNA replication
int03410
Base excision repair
int03420
Nucleotide excision repair
int03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
int00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RX717_09075 (ligA)
03410 Base excision repair
RX717_09075 (ligA)
03420 Nucleotide excision repair
RX717_09075 (ligA)
03430 Mismatch repair
RX717_09075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
int03032
]
RX717_09075 (ligA)
03400 DNA repair and recombination proteins [BR:
int03400
]
RX717_09075 (ligA)
Enzymes [BR:
int01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RX717_09075 (ligA)
DNA replication proteins [BR:
int03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RX717_09075 (ligA)
DNA repair and recombination proteins [BR:
int03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RX717_09075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RX717_09075 (ligA)
MMR (mismatch excision repair)
DNA ligase
RX717_09075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RX717_09075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
RNA_ligase
Zn_ribbon_NUD
HHH
DUF4796_N
UPF0758_N
RUBY_RBDX
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
WOC74179
UniProt:
A0AA97H9R3
LinkDB
All DBs
Position
complement(1772607..1774613)
Genome browser
AA seq
668 aa
AA seq
DB search
MDAGKQIAALREKLRYHNEKYYDQDAPEISDYEYDMLQRELRALEAAHPEYVDADSPTQR
VGGTASGRFAKVTHAYPLESLQDVFSFDELSEFYDRVEGAVGQAEYVVEYKIDGLSVALE
YVDGVFVRGATRGDGQVGEDVTANLKTVRDIPRKLKNAPPHLIVRGEVYMKKSVFDALNR
ELELHEKPLLANPRNAAAGSLRQKDSGVTRQRKLSIFCFNIQNSDELPLASHTESLDYLK
RLGFPVSPRYPVYTDPEDVRSEIESMGETRGELDFDIDGAVVKVNAFVQRETLGSTAKFP
RWAAAYKYPPEVKQTLLKDIIISVGRTGVLTPNAVLEPVRLAGTTVSRATLHNRDFIRQL
DVRVGDTVSVRKAGEIIPEIVGVDTDKRPADAQPYEMPRFCPVCGAPVFDDEEEAAIRCT
GASCPAQLLRNLMHFASRDAMDIDGCGEGNLQKLIDAGLVRSAADLYDLTVEQLLPLGKK
VDTWANNLISGIEASKTRDLSRLLFAFGIRHVGQKAGKVLSDHFGSLDALLAAPVEEMTE
IRDIGQATAESIAAWRELDQSKELIEKLRVHGVNFTGEKTAKSDLLAGKTIVATGSLTLY
TRKEINDLIEALGGKAAGSVSKKTSYVVAGENAGSKLQKAAELGIPVLTEQEFKQMIENE
NTTQQEEL
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggtaaacagatcgccgcgctgcgcgaaaagctgcggtatcacaatgaaaaa
tattacgatcaggacgcgcccgaaatatcggactatgagtacgatatgctgcagcgcgag
ctgcgcgcgcttgaggccgcgcatccggaatatgtggacgcggattccccgacccagcgg
gtcggcggcacggcctccggccggttcgccaaggtgacgcatgcctacccgctcgagagc
ctgcaggatgtattctcgttcgacgagctttccgaattctatgaccgcgtcgagggcgcg
gtggggcaggcggaatatgtggtcgagtataagatcgacggcctttcagtcgcgctcgag
tatgtggacggggtgttcgtccgcggcgcgacgcgcggcgacgggcaggtcggcgaggac
gtgaccgccaacctgaaaacagtcagggatatcccgcgcaagctgaaaaacgcgccgccg
cacctgatcgtgcgcggtgaggtatatatgaaaaagtccgtgtttgacgcactcaaccgc
gagctcgagctgcatgaaaagccgctgctcgccaacccgcgcaacgcggcggcgggttcg
ctgcggcaaaaggacagcggtgtcaccaggcagcgcaagctctccattttctgttttaac
atccagaacagcgacgagttgccgctcgcgagccatacggagtcattggactacctgaaa
cggcttggttttccggtcagcccgcgctatccggtctataccgatccggaggatgtgcgg
agcgagatcgaaagcatgggtgaaacgcgcggcgagctggattttgatatcgacggcgcg
gtggtcaaggttaatgcgttcgtacagcgcgaaacgttgggttcgaccgccaaattccca
cgctgggcggcggcgtataagtatccgcctgaggtcaagcagacgcttctcaaggatatc
atcatctcggtcggacggacgggcgttttaacgcctaacgcggtgctcgaaccggtgcgg
cttgcggggacgacggtttcccgcgcaacgttgcacaaccgcgattttattcgccagctt
gacgtgcgggtaggagacacggtatccgtgcgcaaggcgggcgagatcatccccgagatt
gtcggcgtggacacggacaagcgccccgcggacgcgcagccctacgaaatgccgcgcttc
tgtccggtgtgcggcgcgccggtgttcgacgacgaggaggaggccgcgatccgttgcacg
ggcgcgtcctgcccagcgcagcttttgcgcaacctgatgcactttgcctcgcgcgacgcg
atggatatcgacggctgcggcgagggcaacctgcaaaagctgatcgacgcgggactggta
cgctccgccgccgacctgtatgacctgacggtcgagcagctcctgccgctcggcaaaaag
gtggatacctgggccaataatctgattagcggtatcgaagccagcaagacgcgcgatctg
tcgcggctgctgtttgcgtttggcataaggcatgtgggccagaaagcgggcaaagtgctc
agcgaccatttcggcagcttggacgcgctgctcgcggctccggtcgaggagatgaccgag
atccgtgacattggccaggccaccgcggagagcatcgcggcatggcgcgagcttgaccag
tccaaggagctgatcgaaaagctgcgtgtgcatggggtcaacttcaccggagaaaagacc
gcgaaaagcgatctgcttgcgggcaagaccatcgtcgcgaccggcagcctgacgctctac
acccgcaaggagatcaacgacctgatcgaagccctcggcggcaaggcggcgggttcggtc
tccaaaaagacgagctatgtcgttgcgggggagaacgcgggcagcaagctgcagaaagca
gccgaactgggcattcccgtgctgaccgagcaggaattcaagcaaatgatagaaaatgaa
aatacaacacagcaggaggaactttga
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integrated database retrieval system
