Isosphaera pallida: Isop_1161
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Entry
Isop_1161 CDS
T01407
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ipa
Isosphaera pallida
Pathway
ipa03030
DNA replication
ipa03410
Base excision repair
ipa03420
Nucleotide excision repair
ipa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Isop_1161
03410 Base excision repair
Isop_1161
03420 Nucleotide excision repair
Isop_1161
03430 Mismatch repair
Isop_1161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipa03032
]
Isop_1161
03400 DNA repair and recombination proteins [BR:
ipa03400
]
Isop_1161
Enzymes [BR:
ipa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Isop_1161
DNA replication proteins [BR:
ipa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Isop_1161
DNA repair and recombination proteins [BR:
ipa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Isop_1161
NER (nucleotide excision repair)
GGR (global genome repair) factors
Isop_1161
MMR (mismatch excision repair)
DNA ligase
Isop_1161
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Isop_1161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADV61748
UniProt:
E8R5J9
LinkDB
All DBs
Position
complement(1670041..1672731)
Genome browser
AA seq
896 aa
AA seq
DB search
MTTSLLVPTTDDPIRDRIERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEAERP
DLVTPDSPTQRVGGAPLGEFITVEHTVPMLSIDNAYSEAELREWATRVRKGLTSTEPIHY
VVELKIDGVAIGLRYENGRLVRAVTRGDGERGDDITANARTIHDIPLVLDERRTPAPEVL
EVRGEVFMTESELARLNQLRREAGEPPYANSRNLTTGTLKQLDPRQVAKRRLRFTTHGLG
ETRGLELRSYWAILERLRDWGLPIGPHHARYDDIEAVWRHIQTWKIQRASLDFRTDGVVV
KVDDLGQRERLGTRSKSPRWALAFKYDAEQAITKVRGVTIQVGKTGKLTPVAELEPVLLA
GTIVKRASLHNPEEIARKDVRIGDTVVVEKAGEIIPQVVRVRTEDRDGTEQPFVFPTRCP
CDRADVVKPPGEVDVRCPIPALQCHRQFKEWLAWFAHRDAMDIDGLGEKLIDQLVERGLV
KTPADLYRLDVPTLAALDRMGKKSAENLVKAIAASKSRSLDRLLVGLTIRHVGVGSAETL
ARKFGTLEALRAATIDELKAVPDIGEIVAESVFQYLRDPANIAMIDDLLSVGVSPTAPPV
IVARAGLPLAGKTVVLTGTLPTLKRSAAEDLIKSLGGKVSGSVSKTTSLVVAGADAGSKL
VNALKLGVTVIDEATLLALANPTQPPVEFIVGEPHLKPATPLEREESPRQPDALVPPVSE
NQTCTPEPARSGDASVAPAPPHTAEPIAEPARSGDASVTPAPSPVATESKSLEGQQVLIL
GHFVKPWTQPKLAEWIKARRGVVTQSPGRATLALVGTKPSATKLAEVDARQVIRLDLITM
LSRYGDPAVAVPTAAASQVEQAVEAASPTSPVRRARSGKASHVPSGQDRLLFPIED
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgtccctcctcgtccccacgaccgacgatccgatccgcgaccggattgaacgg
ttgcgccgcgagattgagcaccacaaccgcctctactatgtggaggcggccccggtcatc
tcggacgccgagtacgatcgcctggtcaaagatctcgaggcattggaggccgagcgtccc
gaccttgtgactcccgacagtcccactcagcgggttggtggcgcaccgttgggcgagttc
atcacggtcgagcatacggtcccgatgctctcgatcgacaacgcgtactccgaagccgaa
ttgcgtgagtgggcgacgcgggttcgcaagggtttgacctcgactgaaccgatccattac
gtcgtggaactcaagatcgatggggtggcgatcggtttgcgctacgagaacggacgtctg
gtccgcgccgtgacccgcggcgacggcgaacgcggcgacgatatcaccgccaacgcccgg
acgattcacgacattccgttggtactcgatgagcggcggacgcctgctccggaagtgtta
gaggtgcgaggcgaggtcttcatgaccgaaagcgaactcgcccgactcaaccagctgcgt
cgggaggcgggcgaaccgccctacgcgaactcccgcaacctcaccaccggcacactcaaa
caattggaccccagacaggtcgccaagcggcgtttgcggttcaccacccacggcctgggc
gagacccgcgggttggagttgcgctcctactgggcgattctagagcggttgcgggactgg
ggattgccgattggtccccaccacgcccgctacgacgacatcgaggcggtttggcgtcat
atccaaacctggaagattcagcgcgcctcgctggacttccgtaccgatggcgtggtggtc
aaggtggatgatctgggccagcgcgagcgtctggggacgcggagcaagtcaccccgctgg
gcgttggcattcaaatacgacgccgagcaggcgatcaccaaagtgcggggcgtgaccatc
caggtgggcaagactggcaagctgaccccggtggccgaactcgagccggtactcttagcg
ggcacgattgtcaaacgcgccagtctgcacaaccccgaagagatcgcccgcaaagatgtg
cggattggcgacacggtggtggtcgagaaggccggcgagatcatcccccaggtcgtgcgg
gtccgcaccgaggaccgcgacggcacggaacagccctttgtgtttcccacccgttgcccc
tgcgaccgcgccgacgttgtgaagccgcctggcgaggtcgatgtccgctgcccgatcccc
gcgctccagtgtcatcgtcaattcaaagaatggctcgcctggtttgcccaccgcgacgcg
atggacattgacggtctgggcgaaaagctgatcgatcagttggtcgagcgtggtctggtc
aaaacccccgctgacctctaccgcttagacgttccaaccctggccgccttggaccggatg
ggcaagaagtccgctgaaaatctcgtcaaggcgatcgccgccagcaagagccgttcgctg
gaccgcttgctcgtcgggttaacaattcgtcatgtgggagttggttccgccgagaccctg
gcgcgcaaattcggcacgttggaggcgctgcgagccgcgaccatcgacgaactcaaggcc
gtgcccgacattggcgagatcgtggccgagagcgtgtttcaatatttgcgcgaccccgcc
aacatcgccatgatcgacgacctgttgagtgtcggggtgtcgcctaccgctcccccagtg
atcgtcgcccgcgctggtcttcctctggcgggcaagaccgtggtgttgaccgggaccctg
ccgacgctcaagcgttcggcggccgaggacctgatcaagtcgctaggcggcaaggtttcg
ggatcggtgtccaagaccacctcgttggtcgtcgccggggctgacgccggttctaagctg
gtcaacgctctgaagctgggcgtgacagtgatcgacgaggccaccctactcgctctggcc
aacccgacccaaccccccgtcgaattcatcgttggtgaaccccacctcaaacccgcaacc
ccgcttgagcgggaggaatccccccgacaaccggacgccttagttccaccggtgtcggag
aaccagacttgcactcccgagcccgcgcgttctggagatgcaagcgtcgctcctgccccg
ccccacaccgccgaacccattgccgagcccgcgcgttctggagatgcgagcgtcactcct
gccccctcccccgtcgcgaccgaatccaagtccctagaagggcaacaggttctcatctta
ggacacttcgtcaagccttggactcagcccaagctcgcggagtggatcaaagccaggcgt
ggggtcgtcactcaatcgcctgggagggccacgctcgcgctggttggcaccaagccctcc
gcgaccaaacttgccgaagtcgatgcccggcaagtgattcgtctcgacttgatcaccatg
ttgtcccgctatggagacccggccgttgccgttccaaccgctgcggcatcccaggtagag
caggccgtcgaggccgcttctccaacctcgccagtccgtcgcgccaggtcaggcaaagcc
tctcatgtcccgtctggccaggatcgtctgctgtttcccattgaggattga
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