Ilyobacter polytropus: Ilyop_0239
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Entry
Ilyop_0239 CDS
T01337
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ipo
Ilyobacter polytropus
Pathway
ipo03030
DNA replication
ipo03410
Base excision repair
ipo03420
Nucleotide excision repair
ipo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ilyop_0239
03410 Base excision repair
Ilyop_0239
03420 Nucleotide excision repair
Ilyop_0239
03430 Mismatch repair
Ilyop_0239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipo03032
]
Ilyop_0239
03400 DNA repair and recombination proteins [BR:
ipo03400
]
Ilyop_0239
Enzymes [BR:
ipo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ilyop_0239
DNA replication proteins [BR:
ipo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ilyop_0239
DNA repair and recombination proteins [BR:
ipo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ilyop_0239
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ilyop_0239
MMR (mismatch excision repair)
DNA ligase
Ilyop_0239
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ilyop_0239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
UPF0758_N
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
ADO82028
UniProt:
E3HAF4
LinkDB
All DBs
Position
276374..278407
Genome browser
AA seq
677 aa
AA seq
DB search
MENILEKATKIKEKIDKYNYYYYVKNESLVSDIEYDKLLKELEEIEKKHPEIKDELSPTR
QVGSSLSDTKFQKVEHKKPMLSLSNTYNIKDVEDFHQRIDKILGKLKEDESKKITDYALE
LKLDGVSISVHYKNGKLVKGVTRGDGTVGEDVTENIMEIKSIPKYLKENIDIEARGEIVL
PLSEFKKLNQIRYDKGEDLFANPRNAASGTLRQLDSKIVAERNLDCYFYFLADCDKLGIE
KHSESMEFLEKVGLKTTGVCDLCSSIEELEDRIRYWENNRGVLDYETDGLVIKVNMVELW
DKLGATTKSPRWAISYKFPAKQVTTTLKNITWQVGRTGKVTPVAELEEVEVSGSKVKRAS
LHNFDEIIRKDVKIGDRVFIEKAAEIIPQVVKVVKEARTGEEKEIMPPSVCPECGTELGR
EEGLIDLRCPNEKCPAKVRGQIEYFVSRDAMNINGLGKKIVEKFIEIGKIKDVSDIYDLH
LYKDELKSLEKMGAKSVENLLKSIEDSKKREYPKSLYSLGIPHVGKFLASLLAKESKNID
KLAQMSIEDLLEIDGVGKKVAESVYGVFRNKKFLERLEKLKNYGVNFKIKEVEDTAEFFN
EEFKDKTFLATGKLKHFTREGIKEYIESLGGKNLSGVSKKLDYLIVGEKAGSKLKKAEEL
KTVKILTESEFLEMTEK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatattttggaaaaggccactaaaataaaagagaagatagacaaatataattac
tattattatgttaaaaatgaaagtctagtgtcagatatagagtatgacaagctcttgaaa
gagttagaagagatagaaaaaaaacacccagagatcaaagatgaactttctcccactaga
caggtaggttctagcctgagtgatacaaaatttcagaaggtagagcataaaaagcccatg
cttagcctgtctaacacctataatataaaggatgtggaagattttcatcagagaattgat
aaaattctggggaagttaaaagaagatgaatctaaaaaaattacagattatgctctggaa
ctaaagcttgacggagtgtcaataagtgtccactataaaaacggtaaacttgtaaagggc
gtaactagaggagacgggacagtaggggaagatgtaactgaaaatatcatggagataaaa
tccattcccaagtacctgaaagaaaatatagatatagaggcaaggggagagatagtcctt
ccgttaagtgagtttaaaaaattgaaccaaataagatatgacaaaggtgaagatcttttt
gccaatccaagaaatgccgcgagcggtaccctgagacagttagattctaaaatagtcgct
gaaagaaatctggactgttatttttactttttggccgactgcgataaactcggaatagaa
aaacactctgagagcatggaatttttggaaaaagtaggacttaaaacaaccggagtctgt
gatctgtgcagcagtatagaggaattagaagacaggataagatactgggaaaataacaga
ggagttttagactatgagactgacggtcttgtgataaaggttaatatggtagaattgtgg
gataaattaggtgctacaacgaaaagtcctagatgggccatctcatataaatttccagca
aaacaggtaactactaccctaaaaaatattacctggcaggtgggaagaacagggaaggta
actcctgtagctgaactagaagaagttgaagtttctggaagtaaagtaaaacgagccagc
ctgcataattttgatgagataataagaaaagatgtaaaaataggcgacagggtatttatt
gaaaaggcagcagaaattattcctcaggttgtaaaggtagtaaaagaagccagaactgga
gaagaaaaagagataatgcctccttcggtgtgtcctgaatgtggtacagaactaggtagg
gaagaggggcttatagatctgaggtgtcccaatgaaaagtgccctgctaaggtaagggga
cagatagaatattttgtttcaagagacgcgatgaatataaatggacttggaaagaagatt
gtggaaaaattcatagagataggaaaaataaaagatgtttctgatatatatgatctgcac
ttatacaaggatgaacttaaatccctagaaaaaatgggagctaaaagtgtggaaaactta
ttgaaatcaatagaggacagtaagaaaagagaatatcctaagagcctttattctttgggg
atacctcatgtggggaaattcctggcttcactccttgctaaggaaagtaagaatatagac
aagctggctcagatgagtatagaggatttgctggaaattgacggtgtaggaaaaaaggtt
gcagaaagtgtttacggtgtttttagaaataaaaagttcttagaaagattggaaaagcta
aaaaattatggtgtaaattttaaaataaaagaggtagaagatacagctgaattttttaat
gaagaatttaaagataaaacttttcttgcaactggtaaattaaagcattttactagagaa
ggaattaaggaatatatagaatctctcgggggtaaaaatctttcaggtgtgagtaaaaag
ttagattaccttatagtaggggaaaaggccggtagtaagcttaaaaaagcagaggaatta
aaaacagtaaaaatattaactgagtccgaatttttagaaatgacagagaagtaa
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