Candidatus Improbicoccus pseudotrichonymphae: CfP315_0662
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Entry
CfP315_0662 CDS
T09760
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ips
Candidatus Improbicoccus pseudotrichonymphae
Pathway
ips03030
DNA replication
ips03410
Base excision repair
ips03420
Nucleotide excision repair
ips03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ips00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CfP315_0662
03410 Base excision repair
CfP315_0662
03420 Nucleotide excision repair
CfP315_0662
03430 Mismatch repair
CfP315_0662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ips03032
]
CfP315_0662
03400 DNA repair and recombination proteins [BR:
ips03400
]
CfP315_0662
Enzymes [BR:
ips01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CfP315_0662
DNA replication proteins [BR:
ips03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CfP315_0662
DNA repair and recombination proteins [BR:
ips03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CfP315_0662
NER (nucleotide excision repair)
GGR (global genome repair) factors
CfP315_0662
MMR (mismatch excision repair)
DNA ligase
CfP315_0662
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CfP315_0662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
Osmo_CC
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BED92080
UniProt:
A0AA48IH18
LinkDB
All DBs
Position
702718..704568
Genome browser
AA seq
616 aa
AA seq
DB search
MNWRKIEEKYNEYCNLLNFYKKELHYADDLSIEDDEYDDLKRKIEEIETNYPQIASKDSP
LNVIGSEVSTDLKSVKHEIKMESLHDSFTFEEIRKFYDKSNSLSYAVEPKIDGLSISVIY
ENGILKTASTRGNGYYGEDITEKAKKIKNLPHEIDKGIPLLEVRGEVFMPRVEFKGLIKK
YEEFDGSQPFKNPRNAAAGILRNKNLKIVESYNLKVLIFNVERLITDCFYFRAPWNLKDS
NFLFNTHANSLEYAKKLGLPVINSFLCESYEDIEDKIEEIKKRRLSFEFQVDGAVIKINE
LPRRAQLGSTNTHPRWAEAYKYKPEEAITKILNIENQLGRSGALTPVATFDSVMLSGSYI
SKATLHNYDYIVSKDIKIGDYVRIRKAGDIVPEVISHVTEIKQNDEVVDLKEYHHNLPTF
NPPEFCPFCNSKLEKKPDEIALKCQNDKCKKKIIEKIAHFTSKNAMDIEILGRKTVEKLV
NSGILNSFEDIYKLDAEVIYKEDIESINKINSGQIKFDDFDYDIYLKKDIKKIMDKIEES
KGRPLSRVIYALGIPYVGRETSLMLANKFKEFKKLTEVKEDDLNNIEGIGEISIKSILNF
FKKEKFKYFEEINFRQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagaaaaatagaagaaaaatataatgaatattgtaatttgttgaatttttat
aaaaaagaattacattacgcggatgatctttctatagaagatgatgaatacgatgatttg
aaaagaaaaatagaagaaatagagactaattatcctcaaatagccagtaaagattctcca
cttaatgttattggttctgaagttagtacagatttaaagtctgtcaaacacgagatcaag
atggaaagccttcatgattcgtttacttttgaggagatacgaaagttttatgataaaagt
aactctttgagttatgctgtagaacccaaaatagacggtctttctatttctgtcatatac
gaaaatgggattttaaagacggcgtcaacacgtggaaacgggtattatggcgaagatatt
accgaaaaggcaaagaaaattaagaatttgcctcatgaaatagataaaggcatccctctt
ttggaagtaagaggcgaggtttttatgcctagagtagaatttaaaggtcttattaaaaaa
tatgaagaattcgacggttctcagccttttaagaatcccagaaatgccgccgcgggaatt
ttgagaaataaaaatctaaaaatagtagaaagttataatcttaaagttttaatatttaac
gttgaaagattaataacagattgtttttattttagagcaccatggaatttgaaagacagt
aatttcttattcaatacacatgccaattctttggaatatgccaaaaaattaggtttgccc
gttataaattcttttttatgcgaaagttatgaagacatagaagataaaatagaagaaata
aaaaaaagacgtctatcttttgaatttcaagtggacggggcagtaattaaaataaatgag
ttgcccagacgagcacaactcggaagtacgaacacacatccaaggtgggcagaagcatat
aaatacaaaccagaggaagcaataactaaaattttgaatattgaaaaccaattgggcaga
agcggtgctttgacacctgttgcgacttttgacagtgttatgctttccggttcatatatt
agcaaagccacacttcataattatgattacattgtatcaaaagatataaaaataggagat
tacgtaagaatacgaaaagccggggacattgtaccggaagtgatttcgcatgtcacggaa
attaaacagaatgacgaagtagtggatttaaaagaatatcatcataacttacctactttt
aatcctcctgaattttgtcctttttgtaattctaaattagaaaaaaaaccggatgagata
gctttaaagtgccagaatgataaatgcaagaaaaaaatcatagaaaaaatagcacatttt
acttcaaagaatgccatggatattgaaatccttggtagaaaaactgtagaaaaattagtt
aatagtgggattctgaatagttttgaagatatttataaactcgatgcggaagtaatctac
aaagaagacatagaaagcataaataagataaactccggacaaataaaatttgatgatttc
gactatgatatatatttaaaaaaagacataaaaaaaattatggataaaatagaagagtca
aaaggcaggcctctaagtagagtgatttatgctctgggcataccatatgtcgggcgagaa
acttcactcatgttagccaataaattcaaagaattcaaaaagctaacagaagttaaagaa
gatgatttgaacaacatagaagggataggcgaaataagcataaaaagcattttaaatttt
ttcaaaaaagaaaaattcaaatatttcgaggaaataaatttcagacaataa
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