Ictalurus punctatus (channel catfish): 108254705
Help
Entry
108254705 CDS
T04658
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein isoform X1
KO
K25100
Msx2-interacting protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108254705 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108254705 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
108254705 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SPOC
RRM_5
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
108254705
NCBI-ProteinID:
XP_017305443
Ensembl:
ENSIPUG00000018212
UniProt:
W5UG27
LinkDB
All DBs
Position
21:complement(20726266..20746318)
Genome browser
AA seq
3242 aa
AA seq
DB search
MVRETRHLWVGNLPEHVREEKIVEYFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQ
KAHNAVNKMGDRDLRTDYNEPGSVPSSVRGLDDNPPSSSHTRDVASFSRAAVGPVYGPPV
SLHTREGRYERRLDGSSDSRDRAYEHSPYGHHERSGTFDRPRHYNTDYYRDRAIFASGVG
ASPAVSAISGGFETPESHFESRIRDPFTLSGSARRDPYRDDRGRRVDRTYHHRRSRSSHS
SQSRHPSPQRTTGQTPKASHSPKRAPVSPGRGPRSRSRSRSSSSDSVSSTSSTGSGSSDS
NSSSSEGSRARSVQSAATHPPPAPPPLSLDCDEPRRSFGIRVQNLPVRSTDTSLKDGLFH
EFKKYGKVTSVQIHGASEERYGLVFFRQQEDQEKALSVSKGKLFFGMLIEVTAWNGPETE
SENEFRPLDGRIDEFHPKATRTLFIGNLEKTTNYQQLLDVFQRFGEIVDIDIKRVNGVPQ
YAFVQYSDIASVCKAIKKMDGEYLGANRLKLGFGKSMPTTCVWLDGLSSNITEQYLTRHF
CRYGHVVKVVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQESQVAFYR
SMQASGQDMRDFYEIPSDRRDERRPSYHEFSAERAYYENVRAPGIYADDPRRDYPARSRE
RYPELDHYQGDHYDPRYHEDPREYRDYRDPFEQDIRKYSYIQRERERERERFEADRSRWS
PSHPRRPITPSASPSPSDRVSREAERRVYRHSSERSGSCSSLSPTPQFEKSEKSPVDYKT
ESLDREVEQAEADRASGAEKSKRGRRKEKADREKGEKTKSRRGKVQSPSIPYVEADREPS
LDSNSGKTKGSDAEGSERQRHKAEGEPSPSDPVSRVEPQKERLDGAKIDSVDRDNKGRSK
KHLKPELGNEGKDSLGDSERLAARKRRFGDPTGKAIKQKRGRLEDEQSTGVTQPADFVAS
FSKEGEGDVKTLEKEAQKREHPKPKSERVASQFRDELDHRADSQNSSGRQEEHSETNVKS
LDSKAQSGPSVSRRFSNDGTPEKDSKGREEYLDIDLSQSYRKQMEQNRRLRQQLQEPDKP
GKPETPQCVETEDFEHRSLVHEVGKPPQDVTDNSPPSKSKKQDHLDIEVGTKRERVYRIF
RPKSEESEWSTNSPRFNASQHGEEEYTDVPQLITVKEVKEQPKQEDSSHQDMELTVKRVH
TSQVSKLSSSLHDEQRRWESRLKQDLLPDFSRSSEKRRLNRSYLEYRLWPDLEPGEVRSD
SEEDREHKPNSPMPSTSMSFPERQRRDRLSESKLTGSLERNKFCSFALDQTITPDTKALL
ERAKSLSSSREDNWSFLDSDSHFASFRSRKDTEKVESTPRPTPSWYMKKKKIRSESEDKL
DDRKEDPKPEEQERRELFASRFLHSSIFEQDSRRLQHLERKHEDPEHGMGNAANQQVQIE
GQPDSEPVVLFHDRFLELTRLQQQKGKELTQQESKKEESVDGQVCEKTQEEEQRSAVEPA
EMKPAEIKPVSPVQAPQSSPVQIMQALPVQETQKSPPVVTTKETSPQRDVCNVEASSPKQ
LVLPVKEEEKPSEQPLVCPTNPLPQEPPESNRSETQDSKPLVNEIKTSPTKELELTNDRD
VEQCSGSETQTTDSQVNYHPKSEPQTELPELQNPPSPMIVDEAEGGLGKPEPVTVEPAPP
AKETESKAEDSYTVEEPISPPPRSRNKKGKTSPTTAVAPVTPSSTPDKQSTRKSERIDRE
KLKRSSSPRVESSKAISDAKSAGKSPIHSPETEQSVEQNAPPVRARRRNVRSVYATPVED
ESTPQTGKDVESPRGARKRGVDKDSGQAEPDSLPVLHTARRGRPPKNRRQGEEFSAGKSE
RSKLPETKEFEINETGNNETVTKVGKGKHSPHLHKAANQGTGSGLVKKGDKMDKTADAIT
PAEMDVDSQDGSGQHDGGPSVTNEPKEEQKTQNISETKQEKDRITQTDGTTGSQDKLCES
VQEQSPFDKSVKTKTTRITCSSKLTTEDKSLVLKNLRIRLDVTEVKTILQTGEDESGHDD
CPKKVVPGLSPKEQILEPRFEKEAIDEDGNIKESVTTPPKVKDPHEALLSHQMELEQAVE
NIAKLTEDPAPLQFKNSTEPQAPLSELVEGREEDKPANPASETELAAAIDSITSEEMSCS
VPQDQVTGTVGGPDPDIQTLVPDAKVVEGRNSATVHEEASNTGTPRKGGKGRPKTQKRAK
GPKAAASKKEAIKEVVVEPENLSIKSSESISAAVPAVTETPPTAAAAAIIAPLSKHDCNI
TANVVPEVPKVIESALKDQPDLPKSSSPAASKSPSSLRSQPNPYECTSPSLSPTSICLKP
SNPSRLSVSPTDRLNQPKEMAVVSPSATPATPLENPALLSDSFVHDVNTSDLRKILAKPR
GIPISEVSATSGSMHPRESDVKSALHENRQSSIPAQPVLRQSETKQVFNEKSVISVIAST
ATSVISRVCNPPESEEKPSLPMANPFVEKQPPKQMYQTSMEEGSVYHGPPVGEEGGNAGR
YIVESTSLSTGPTAGLRVNTSEGVVVLSHSGQKIEGRQRISAKISQIPPPSAVDIESQQL
VTMPQIKQELYSGSQRDMPKGSVPPADHGHPLKSQTNVSTKHESGPDKLDPYPQSGVVKR
LQQAPGPSQVMSFHHSEYAMLMKHPKKGEGSEPLNVENVKTAWVSTISPAISPHLPSTGG
NHVGFIPGTPADRAPSHIQTKQEPRSPRKSGHPHSPFAKVSSPIGSSSPKGVSMVLPTGL
PAMSQYVPSVHHSEQSVIMPPHSTHGSLGRMSPHRVGQAISMGHLSQGDVRVNTPPLSVM
NYGIHSDGLASSWAPGQQRPTSPQAVGNREMVLKVNPASARGHEASDEEAARRFHQALGR
QPATPLKPESIPAEYRGALHSGLPLERFNMQTRDMRMLIYHPQGERPAAELHQGHIAEAV
PPTSTPTSITASLSPRAHLLQKGVSDKDALKQSEIKRATPPPGKDGMLGIRGAIPAMASP
NRVQLITSGTVPPFSEYPAMYTNLRTVHSQFPENSPMGISQPPRNITPSQGAQESDHNQA
QTESQVEHVGHQQINMVQLLTRYPIVWQGLLALKNETAAVQLHFVCGNKSLGLRSLPVPE
TGPPLRIVQRMRLETQQLEGVARRMTGESEFCLLLAMPCGLNQEDVVTQTQVLKSAFINY
LKAKLAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLINQISSISPHLMIVIT
SV
NT seq
9729 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggaaaccagacacctttgggtgggaaatttacccgaacatgttcgagaagaa
aaaattgtcgaatattttaaacggtatggtcgtgtggagagcgttaaagtcctccgtaag
cgaggttcagaaggcggcgtggcggcgttcgtggattttgtcgacattaaaagcgcccag
aaggcgcacaacgcagtcaacaaaatgggcgacagagaccttcggaccgactacaacgag
cccggttctgtgcccagctcggtccggggcctggacgacaacccgccgtctagcagtcac
acgagggacgttgcgagtttctcgagagccgctgtggggcccgtttatgggcccccggtg
tctctacacaccagagagggacgctatgagcgcagattagacggcagttcagacagtcgg
gatcgcgcatacgagcacagtccgtacggacaccatgaacgcagtggcactttcgatagg
ccgcggcactacaacacggactattaccgagaccgtgccatttttgcctctggagtcggg
gccagccctgcagttagtgcgattagtggcggttttgaaaccccggagtctcatttcgag
tctcgaattcgtgatcccttcactttgtctggttccgcacggcgggatccttaccgtgac
gacagggggcggcgtgttgatcggacttaccatcatcgccggagtcgatcttctcattcc
tcgcaatcacggcacccttctccacaaaggaccacgggacagacccccaaagcctcccat
tccccaaaaagagctcctgtttccccaggcagaggtccgcgttcgcgttcccgaagccga
tcgtccagctcggattcagtcagcagcaccagtagtaccggaagtggcagcagtgactcc
aacagcagttctagtgaggggtctcgagcacgctcggttcagtctgcagccactcaccca
cccccagctcctcctccgctgtctctggattgcgatgaaccgcgtaggagttttggcatc
agggtccagaacctcccagtacgatccacagacacaagtctgaaagatggacttttccac
gagtttaagaagtatgggaaagtgacttcagtgcagatccacggagcctcggaggagcga
tacggcttggtgttcttcagacagcaagaagaccaggagaaagctctcagcgtgtccaaa
ggaaagctcttctttggtatgctgatcgaagtgaccgcttggaatggccctgagacggaa
agtgagaacgagtttcggccgttggacggacgtattgacgagtttcacccaaaggcaacc
agaaccttgtttattggaaatctggagaaaactactaactaccagcagctgcttgatgtt
tttcagcgctttggagaaatagtggatattgatattaaaagggttaacggtgtccctcag
tatgcctttgtgcaatactctgacattgccagcgtgtgtaaagctattaagaaaatggat
ggagaatacttgggtgccaaccgactcaagcttggttttgggaagagtatgcctacaacc
tgcgtgtggttagacggtctgtcctctaacatcacagagcagtaccttacacggcacttc
tgtcgctacggacatgtggtgaaggtcgtgttcgacagactgaaagggatggccctgatt
ttatacaacaacacagattttgcgcaagctgctgtaagagagaccaaaggttggaagatt
ggcggcaacaaaattaaggttgattttgccagtcaggagagccaagtggcattctatcgc
tctatgcaggcatcagggcaagatatgcgtgacttctatgaaatcccctctgacagaagg
gatgaacgaagaccttcatatcatgaattctcagcagagagggcgtactatgagaacgtt
cgggcgccaggaatctatgccgatgatccacgtcgagactatcccgctcgcagccgtgag
cgttatccggaactagaccattaccaaggtgaccactatgacccacgctatcatgaagac
cctcgtgaatacagagattaccgagacccctttgaacaggacatcagaaagtatagctac
attcagcgggaacgcgagcgagaacgcgaacgttttgaggctgatcgcagcagatggagc
ccgtcccacccgcgccgccccataaccccttctgcctctccttcgccatctgaccgcgtt
tcgagggaagcagaacgacgtgtgtacaggcactcatctgagaggagtggaagctgtagc
tccttatcacctactcctcagtttgaaaagtctgagaagtctccagtggattataaaacg
gagagtctggacagagaagtggagcaggctgaggctgaccgcgcaagcggggcggaaaag
agcaagcgcggcaggcgcaaggaaaaagcagaccgagagaagggcgagaagacaaagtcg
aggagggggaaagtgcagtctcctagcataccttacgtcgaagcggacagggagcccagc
ctggattcaaattctggaaaaacaaaaggttcagatgcggagggctcggagaggcagagg
cacaaagctgagggtgaaccctccccttctgatccggtgtctcgtgtggagccgcaaaaa
gaaaggcttgatggtgctaaaattgattcagtggatcgggataacaaagggagatcaaag
aaacacctcaaaccagaacttggaaacgaagggaaagattcattgggggattctgaaagg
cttgcggcacgaaaaaggcggtttggcgatcctactggcaaagccataaaacagaagaga
ggtcgccttgaggatgagcagagcacaggggttactcagcctgcagattttgtggcgtct
ttttcaaaggaaggagaaggcgatgtgaaaactttagaaaaagaggcacagaagagagaa
catcctaagcccaaatcggagagggtggcatctcagtttagggacgaattggatcaccga
gccgattcccaaaactcatctggacgacaagaagagcattccgagacgaacgtgaagtcc
ttagactcaaaggcgcagtctggaccgagcgtgtcaaggcgattctctaatgacgggacc
ccagagaaagacagcaaaggcagggaagagtatttggacatcgatctttctcagagttat
cggaagcaaatggagcagaaccggagacttcgtcagcagctccaagaacctgacaaacca
ggaaaaccagaaactcctcagtgtgttgagacggaagatttcgagcaccgtagcttggtg
cacgaggttggcaagccaccgcaggatgtcactgataactctccaccgagtaaaagcaaa
aaacaagaccacttggacatagaggttggtaccaaaagagaacgggtataccgaattttc
cggccaaagagtgaagagtccgagtggagcacgaactctcccagatttaacgcctctcag
catggagaggaagaatatacagatgttccccaactaattactgtgaaagaagtaaaagaa
caacctaagcaggaagacagttctcaccaggacatggagctaacggttaaacgtgtccat
acctcacaggtgtccaagctaagctcgtccctacatgatgagcagaggcgttgggaaagt
cgcctaaagcaggacttgttgcctgatttttcgaggagctcagaaaaaagacgcctcaat
cgatcatatttggaatatagactttggcctgatttagaacctggtgaggtgcgctctgac
tctgaggaagatcgagaacacaaaccaaactctcccatgccctcaacgtcaatgtccttt
cctgaacggcaacgcagagacagattatcggaatccaaactaaccggctcgctggaaagg
aacaagttttgttcatttgcacttgaccagacaattacaccagacactaaagcattgctg
gagcgcgcaaagtcgttatcctcttcaagggaagacaactggtcttttctggacagcgat
tctcattttgccagtttcagaagcagaaaagatacagaaaaggtagaatcaacaccccga
ccaactccttcatggtacatgaagaagaagaaaatacgaagcgagtctgaggataaactg
gacgaccgaaaggaagatcctaaaccagaagaacaagagcgccgagagctctttgcctct
cggtttctccacagttctatcttcgagcaagactcgaggcgcctccagcatcttgaaaga
aagcatgaagaccctgaacatggtatgggcaatgcagctaaccagcaagtccagatcgaa
ggtcagcctgattctgagccagtggtcctcttccacgatcgctttttagagttaacgaga
ctgcagcaacagaaggggaaagagcttactcagcaagaatccaagaaagaggaaagcgtt
gatggacaagtctgtgaaaagacacaggaggaagagcaacgcagtgctgttgaaccggcc
gagatgaagccagctgagattaaaccagtcagccctgtacaagcccctcagtcaagccct
gtgcaaatcatgcaagcccttcctgttcaagaaactcagaaatcgccgcctgttgtaaca
actaaggagacgtcaccacagcgggacgtttgtaacgtcgaagcatcttcacctaaacag
ctcgttcttccggtgaaagaagaagaaaaaccgtcagaacagccattggtctgcccgaca
aatccactgcctcaagaaccccctgagtcaaatagatctgaaactcaggactcaaagcct
ttggtgaatgaaattaaaacaagtcctactaaagagttggaattgaccaatgaccgggat
gttgagcagtgctccggtagcgagacgcagaccactgactctcaagtgaactatcaccca
aaatctgagccacaaactgagctccctgaattacaaaatcctccctctcctatgattgta
gacgaagctgaaggaggattagggaaaccagagcctgtaaccgtggaacctgcacctcct
gccaaagaaactgagtcaaaagctgaggacagttatacagtggaggaaccaatttctcct
cctccaaggtccagaaacaagaagggcaagacctcacccacaacagcagtagcccctgtg
accccatcaagcacaccagataaacaaagtactcgcaaaagtgaacgtattgatagagaa
aagcttaaacgctcctcttctccaagagtggagtcatctaaagcaatttcggatgccaag
tcggctggcaagtcacccatccatagccctgaaactgaacaaagtgtagaacaaaacgct
ccccctgtgagagcaaggcgtagaaacgtacgttctgtttatgccaccccagtagaagat
gaatctacaccgcaaactggcaaggatgtggagtcaccgcgtggagcacgtaagcgtggt
gtagacaaagactcagggcaagcagaaccagacagcctccctgtactgcacaccgcacgc
cggggacgtccacctaagaatcggcgccaaggagaggaattttcagctgggaagagtgag
cggtcgaaattacctgagactaaggagtttgagatcaatgaaactggaaacaatgaaact
gtcaccaaagtaggcaaaggcaagcattccccccacttgcacaaagctgcaaatcaaggt
accgggtctggattagtgaaaaaaggagataaaatggataaaacagccgacgctataact
cctgctgagatggatgtggattctcaagatggcagtggccagcatgatggcggtccttca
gtgacaaatgagccaaaggaggagcaaaaaacacaaaacatttcagagacaaaacaagag
aaagacagaatcactcaaacagacggcactactggaagccaagataaactctgtgagtct
gttcaggagcagtcaccttttgacaaaagtgtgaaaacaaaaactactcgaataacttgt
agttcaaaactaacgactgaggataaatctcttgttctcaaaaacctccgaatcaggctt
gatgtgactgaggtaaagacaattctgcaaactggtgaggatgaatcggggcatgacgac
tgccctaaaaaggttgtcccaggtttgtcgcccaaagagcaaatcctagaacctagattt
gagaaggaggccatagatgaagatggtaatattaaagagtctgtaacaacacccccaaag
gtcaaggatccgcatgaggcgttgttatcccaccagatggagctcgaacaagctgtggag
aacattgccaagcttacagaagaccctgctccacttcagttcaagaactcaaccgagcct
caagcccctttgtctgaacttgtagaggggcgtgaggaagacaagcctgctaatcctgct
agtgaaacagaacttgctgccgctattgattccatcacatctgaagagatgtcttgcagc
gtgccacaagaccaagtcactggcactgttggcggtccagacccggatattcaaactcta
gtcccggatgccaaagttgttgaaggccgcaactcggccactgtccatgaagaagcttca
aacactgggacgccaagaaaaggaggtaaaggaagaccaaaaacccagaagagagccaaa
gggccaaaggctgctgcaagcaaaaaggaagccatcaaagaggttgtagtggaacctgag
aatctttctatcaagtcctcagaatccatatctgcagcagtaccagcggtcacagagacg
ccgcccacagctgctgctgctgctataattgctcctttatcgaagcatgattgcaatata
actgctaacgttgtccctgaagttcctaaagtgattgagagtgctcttaaagatcagcct
gacttgccaaaatcgtctagtccagcagcaagcaaaagcccatcatcactcaggtctcag
cctaatccttatgagtgtacatctccttctctttctcctacaagtatttgcctgaaacct
tcaaatccaagcagactttccgtttccccaacagaccgattgaatcagcctaaagagatg
gcagtagtctccccttcagccactcctgcaactccattagagaacccagcattgctgtct
gattcctttgtccacgatgttaacaccagtgatctgcgtaaaattcttgcaaaaccaaga
ggtattccaatctcggaggtcagtgctacttctgggagcatgcatccgagggagagtgat
gtcaagagcgcgctgcatgaaaacaggcaatcttctattccagctcagccagtacttcgt
caatcagagacgaagcaagtctttaacgagaaatctgtgatttccgtcattgcctccact
gccacctcggtcatcagtcgagtttgcaacccccctgaatccgaggagaaacccagtctt
ccaatggctaacccatttgtggaaaagcagccaccaaaacagatgtaccagaccagcatg
gaggaaggtagtgtttatcacggtccacccgtcggagaggagggtgggaatgcaggtcgc
tatatagtggagagcacatccctgagcacaggccccactgctgggctcagggtaaacacc
tctgagggggtagtagtgctgagtcactcgggacagaagattgagggacgacaacggatt
agtgccaagatcagtcaaattccaccacctagtgcagtggacatagaatctcagcagctg
gtgacgatgcctcagatcaaacaggaactttacagtggatctcaaagagatatgcctaag
ggttcggtaccaccagcggaccatggtcatcccctgaagtcgcagaccaatgtttctact
aagcatgaatccggaccagacaaattagacccgtaccctcaaagcggggtagtaaaaaga
ttacagcaggcacccggcccgtcacaagtgatgagtttccaccactcggaatacgcaatg
ctgatgaagcatccaaagaaaggagaaggaagtgaacctcttaatgtggaaaatgtgaaa
actgcttgggtgtccactataagtcctgccataagccctcaccttccctctacaggtggc
aatcatgtaggattcataccaggtacgcctgcggatagagccccttcacatattcagacg
aaacaggaaccccgctcgccgcgaaaatccggtcacccccattctccctttgccaaagtg
tcttctcctattggctcttcatctcctaaaggcgtgtctatggtcttaccaaccggttta
cccgccatgtctcagtatgtccccagcgtgcatcactctgaacagtcagtcatcatgcct
cctcatagtacacatggcagccttggcagaatgtcacctcaccgtgtgggccaggcaatt
tccatgggtcacctttctcagggagatgtaagagtcaacacgcctccgctgtcggttatg
aactacggaattcactctgacggcctcgcttcgtcttgggcgcctggtcagcagcgcccc
acgtctcctcaggctgtgggtaacagagaaatggttctcaaagtcaacccggccagtgca
agaggtcacgaagcaagcgacgaggaggcagcaagacgctttcatcaagcgcttggaagg
caaccggcgactccactcaaaccagagtcgataccggcggaataccgtggcgctcttcac
agcggactgccactggagcggtttaacatgcaaacgagagacatgcggatgctgatatac
cacccgcagggagagcgtccagctgccgagctgcaccaggggcatattgcggaggccgtc
cctcccacctcgacaccgaccagcattacggcctcgctctctccacgggcgcaccttttg
cagaaaggagtgtccgacaaggatgccctgaagcagtctgaaataaagagggccacaccg
ccccctgggaaagatggaatgctgggaatccgtggcgcaatacctgccatggcctctcct
aatagagtacaactgatcacatcggggaccgtgccacccttttcggagtatccggccatg
tacaccaacctgcgcaccgtgcattcacagtttcccgaaaattcacctatggggatcagc
caaccacctcgcaacatcactccatctcagggtgctcaagaatccgaccacaaccaggct
cagactgaaagtcaagtggagcatgttggacaccaacagatcaacatggtacagcttctc
acgaggtatcctattgtgtggcaaggcttgctggcattgaaaaatgaaactgctgctgtc
cagttgcattttgtgtgtggaaacaaatctcttggcctgcgctcgcttcccgtgccggag
actggacctcctctgcgtatcgtccagaggatgagattagaaacgcaacagcttgaagga
gtagctcgcagaatgaccggtgagagcgagttctgcctcctgctcgccatgccttgcggt
ctaaatcaggaagacgttgtgacgcagacacaagtgctcaaatcagccttcattaactac
ctgaaggccaaactggctgcaggcatcatcaatgtccccaatcctggctccaatcagcct
gcctacgtgttgcagatcttccctccgtgcgagttttcagaatctcacctttcacggctt
gcccccgacctcatcaaccagatctccagcatttcgcctcacctcatgatcgtcatcacc
tcggtgtga
DBGET
integrated database retrieval system
