Ictalurus punctatus (channel catfish): 108256340
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Entry
108256340 CDS
T04658
Name
(RefSeq) antigen peptide transporter 1
KO
K05653
ATP-binding cassette, subfamily B (MDR/TAP), member 2 [EC:
7.4.2.14
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu02010
ABC transporters
ipu04145
Phagosome
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108256340
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108256340
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108256340
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ipu02000
]
108256340
Enzymes [BR:
ipu01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
108256340
Transporters [BR:
ipu02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
108256340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_15
SMC_N
Med29
Motif
Other DBs
NCBI-GeneID:
108256340
NCBI-ProteinID:
XP_017308574
Ensembl:
ENSIPUG00000005210
UniProt:
W5UI48
LinkDB
All DBs
Position
23:complement(17971285..17982626)
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AA seq
735 aa
AA seq
DB search
MKEKMAVYLFLFLLLCVDVCVVKTFGVTRLSPLLIPHSFTSLWVGGLLRFTVLLLITCLY
PLSPAWMRSANGVQTLAVHSLVYPVYVSLLWACGWSTMELTWGWHTWQAMFHCYAVSALS
LLLWERYVPSVLTKTKVKPKEKGQASLQRLLGYVKPYRHRFTAVFLFVIASSLGEMAIPH
YTGKITDWIMKEDEPDAFANAIKIMSILTIMSAVFEFVCDLIYNITMSLVHTAIQSQVFE
CVLKQEIAFFDKASSGELVSRITKDTNDMSESLSEELSLLMWYTMRLVFLYGSMLLLSVR
LSIFTILGLPVILIVPEFSGKFYQTHAVKVQESLAKSNSVATETFSSIKTVKSFANEDGE
SERYKKCLEHTYSLNKVEAAGYAASTWTNSMSSLALKVSILYYGGQLVAGNDVSSGDLVS
FVLYELQFSQAVEALMSYYPRVKKAVGASEKIFEYVDRKPDVPPEGSLAPKTLRGHVRFD
NVTFAYPTRPAENVLKGVSLELKPGEITALVGPADGGKSTIVRLLERFYQPQDGEILLDE
QPLKNYKDQYLHDKISVVAQEPVLFGRSIRENIKYGTADATDEDMYDAAKLANAHRFITS
DFPNGYDTDAGEKGGKVSGGQKQRIAIARALIRKPQILVLDDSTSDLDAESEHVVHQALL
KNLNGRSVLLITNKMSGVETANNVVFLQKGEVLEQGSHDDLQKKNGPYAEFVRLQNTGFH
RNAHEDGETSDSTKQ
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaaagatggcagtgtatctgttcttgttcctgcttctgtgcgtggacgtgtgt
gtggtgaagacgtttggggtgacccggctctcgcctctactcattcctcattcttttacc
tctctctgggtcggaggactgctgaggttcaccgtccttctcctcatcacctgtctctac
ccattgagcccggcatggatgaggagcgctaatggagtccagaccttagctgtgcacagt
ttggtctatccggtgtatgtctcactgctgtgggcatgcggttggtcgacgatggagctc
acctggggctggcacacctggcaagcaatgtttcattgctatgccgtttcggctctctcg
ctgctgctgtgggaacgctacgtgccctccgtccttacaaagacgaaggtaaaacccaag
gagaaaggccaggcctccctgcagaggctgctgggatacgtgaagccgtaccggcaccgg
ttcacagcggtctttctgttcgtgatcgcttcgtcactcggtgagatggctattccgcat
tacacgggtaaaatcactgactggatcatgaaggaggacgaaccggacgcttttgctaac
gccatcaaaatcatgtcgatcctgaccatcatgagcgccgtgtttgagtttgtgtgcgat
ctcatctacaacatcaccatgagcctcgtacacaccgccatccagagtcaggtgttcgag
tgtgtgctgaaacaggaaatcgccttcttcgataaagcttcctcaggtgaactcgtgtcc
cgaatcaccaaagacaccaacgacatgagcgagtccctgagcgaagagctcagcctgctc
atgtggtacaccatgcgtttagtcttcctctacggctccatgctgctcctctccgtgcgc
ctgtccatcttcaccatcctcggccttcctgtcattttgatcgtcccggagttctccgga
aagttctaccagactcacgcagtcaaagtgcaggagtctctcgccaagtcgaacagcgtt
gccaccgagacgttctcctccatcaagacggtgaaaagcttcgccaacgaggacggagag
tcggagagatacaagaagtgcttggagcacacctactcgctcaacaaagtggaagcggcc
ggttatgcggcatcaacctggaccaacagcatgtccagtctggccttgaaagtgagcatc
ctgtactatggaggccagctggtggcaggaaatgatgtcagcagtggcgacctggtgtct
ttcgtgctgtacgagcttcagttcagtcaggctgtcgaggctctgatgtcctattaccct
cgagtgaagaaagccgtcggcgcctcagagaagatcttcgagtacgtggaccggaagccc
gatgttcctcctgaaggttccttagctcccaagacactcaggggtcacgtgcgtttcgac
aacgtcactttcgcgtatccgacgaggccggccgagaacgttctgaaaggcgtttctctg
gagctgaagccgggagagatcaccgctctggtaggtccagcagatggcggaaaaagcacc
atagtcaggcttctcgagaggttttaccagcctcaggacggagagatcttactggacgag
cagccgctgaagaactacaaggatcaatatctgcacgacaagatcagcgtggtcgctcag
gagcccgtactgtttggccgctccatcagagagaacatcaaatacgggacagcagacgcc
accgatgaagacatgtacgacgctgctaaactggccaacgctcaccgattcatcaccagc
gactttccaaacggatacgacaccgatgccggagaaaagggaggcaaagtgtccggaggt
cagaagcagagaatcgccatagcgagagccctgatccggaagccgcagatactcgttcta
gatgattccacgagtgacctggatgctgagagcgagcatgtggtgcaccaggcgctgctg
aagaacttgaacggtcgctccgtgctgctcattaccaacaagatgagcggcgtggagacg
gccaacaacgtggtgttcctgcagaagggagaggtgctggagcagggcagccacgacgat
ctgcagaagaagaacggcccgtacgccgagtttgtacggctgcagaacaccggattccat
cgtaacgctcatgaagacggcgaaacctccgactcgacaaagcaatga
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