Ictalurus punctatus (channel catfish): 108257161
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Entry
108257161 CDS
T04658
Name
(RefSeq) integrator complex subunit 1 isoform X1
KO
K13138
integrator complex subunit 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108257161
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
108257161
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
INTS1_INTS2-bd
INTS1_RP2B-bd
INT1_R3
INTS1_R4
Cnd3
UNC45-central
RHG20_PH
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
108257161
NCBI-ProteinID:
XP_017310147
Ensembl:
ENSIPUG00000018637
UniProt:
A0A2D0PVV4
LinkDB
All DBs
Position
24:7754242..7787185
Genome browser
AA seq
2214 aa
AA seq
DB search
MNRPKPTSIRRPSGAKTSGHAPPGDFIALGAKSQASETKANPTLLKPASTGLPPDRKREA
SSSLPSSSGLSNLTKRPKHPSNPPSALSRLAEVAAVDKRAISPSIKEPSVVPIEVPPAVL
LDEIEAAESEGNDERIEGLLCGAVKQLKMNRAKPDITLYLSLMFLAKIKPNVFATEGVIE
ALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVD
SSHCKTFVDNIQTAFNTKMPPKTMLLQAETGRSGGDLSAGNSPHPSTPDEDDNQAELLIA
EEKFSPEEEGQVMPRYDELADSVEDYVLDVLRDQLNRRQPMDNVSRNLLRLLTATCGYKE
VRLMAVQRLEMWLQNPKLTRPAQDLLMSLCMNCRTHGADDMDVISNLIKIRLKPKVLLNH
YMLCVRELLNAHRDNLGTMIKLVIFNELSNARNPNNMQVLHTVLQHSPEQAPKFLAMVFQ
DLLTNKDDYLRASRALLREIIKQTKHEINFQSFCLGLMQERKEASYADMEFKERFVIQVT
DLLTVSMMLGITAQVKEAGIAWDKGEKKNLEVLRAFQNQIAAIQRDAVWWLHTVVPSISK
LGPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPLLEDTLMRILVIGLS
RDLPLGPADAMELADHLVKRAAGVQSDDLDVLHVERIQLIDAVLNLCTYHHPENIQLPAG
YQPPNLAISTLYWKAWLLLLVVTAFNPQKIGLAAWDGYSTLKMLMEMVMTNNYSYPPCTV
ADEETKTEMISRELQISQKERQEILAFESHLAAASTKQTITESNSLLLCQLTSLEPKGPP
RRPPPHIQEQLKSLNQSLRLGHLLCRSRNPDFLLNIIQRQASSQSMPWLADLVQSSEGSL
DVLPVQCLCEFLLHDAADDAPSADDEEEGESKEQKAKKRQRQQKQRQLLGRLQDLLLGPK
ADEHTTCEVLDYFLRRLSSSQVASRVLAMKGLSLVLSEGGIKDGDERDHLMEDDSRDAEL
LPSYQWLLQDLPRLPLFDSVRGMTANALQQAIHMETDPQTISAYLIYLSQHAPVGEQGLH
NDLALDVARLIVERSTIMNSLFSKHSCRPESDATLTALISIFSTYICRMRKTKEGEDLYS
WSESQDQVFLRWTTGETATMHILVVHAMVILLTLGPPKESEGAASEESSETPTRLSVISG
ESDFFTLLEIWFPDKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVSRLVDAALQDLEPQ
QLLLFVQSFGIPVSSMSKLLQYLDQAVSHDPQTLEQNIMDKNYMAHLVEVQHERGATGGH
TFHSLLSASLPPRRDSAEASRVKVTVETPHSSLKMRAVSQMPVISPDDDLTTVLLQLFPV
KMDPRWPTPPSRPLALALQQVLAQEVLRARKGMGQQGGTAPRVLQALAAVFGSAHAGPLV
VAMRHSHAFSCPLLRQLHLYQQTASQDVAFSSLFFKVVMQMLTWLESSALEAGPLSNLLK
SLVAQYSHKHHITDVRTGFLHLAEALTYRRDSEVAVRGIIASLRAGEKCNAEPELIRKVL
QGLMEVKSPYLEELLSLLMTVGMETGAPSNTAGPVAMVIMLLLQETEERGVKLEAESKTI
SEGKRTGSSSGLLVDWLELLDPEVTSVCSDLQQKLLFSVNKGKGSGLCPVPSYRPYLLAS
LTHQSNWSTLHQCITTLLNKPKEHSVDPSSALDFLWACSHIPRIWKGRDQKTPQKRTEKF
VLKLTSDELISLVDLILWESELSWRDTGKADETLDQASCSLIQSRLPLLHSCCHSDPQNV
HTVCEYLLNCIKKWGDSVMSRRCENLLLQIYLQFPEVIQHVRLPDASLSGEAAADGSTCK
LDILVHRLITLMADTGESKSAESRVSDATLACRRLAVSHPVLLLRHLPMIAALLHGRIHL
NLQEFRQQRHLTFFSDVLAILELLQPRVFHSDHQRALQDCLLSFIKVLQNLRRLSRMPVI
NKFVQFIQKYITHDAAAAVPYLQKHSDILQGLASENPDLAQLKSLLAGLTLPVKMCSSDV
SAEDRDADDSSSGSLPLVSISASTALSSTDMTKYLKKLSGGESIEDVLDVLTEVDEKSKR
NPEIVQYFVNDLQRLMSSPEELCRNMAFSLALRCIQNTPSLASDFLPTFMYCLGSGNFDV
IQTALRNLPEYVLLCQEHAGILLHKAFLVGIYGQIDTSSVIAESMKVLHMEATT
NT seq
6645 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgaccgaagccgaccagcattaggcgccctagtggtgccaaaacctcaggccac
gctcctccaggagacttcatcgctttgggggccaaaagccaggccagcgagaccaaagca
aacccgactctgctcaaaccagcatccacaggtttaccaccagaccgcaagagagaggcg
tcctcgtctttaccctcctcttcaggcctgtccaacctgacgaaacgccccaagcaccct
tccaatccacccagcgcactgtcacgtctggctgaagtagctgccgtcgacaaacgagca
atttcaccctcgatcaaagagccgtctgtggttcctattgaagttcctccggcggtatta
ctggatgagatcgaggcagcggaatctgaaggcaacgatgagcgcatcgaaggactgctg
tgtggtgcagtcaaacagctgaagatgaaccgggccaagcctgatatcacactctacctc
agcctcatgttcctcgccaagatcaaacccaacgtgtttgcaactgaaggagtcattgag
gctttgtgcagcctacttcggcgtgatgcctccattaactttaaggctaaagggaacagc
ctggtgtccgttctggcctgcaatttgctgatggcagcgtacgaagaggacgagaactgg
cctgagatctttgtcaaagtgtacatcgaggactctcttggcgagagaatctgggtggat
agctcccactgtaaaacattcgtagacaacatacagactgcatttaacaccaagatgccc
ccaaagaccatgctgctgcaggctgaaacgggccgctccggaggagatctgagcgcagga
aacagtcctcacccttccactccagacgaggacgacaatcaagctgagcttctaattgca
gaggagaagtttagtccggaagaggaagggcaggtcatgcccaggtacgacgagctggca
gatagcgtggaggactatgtcctggacgtattaagggaccagctgaaccgcagacaaccc
atggataacgtgtcacggaacctgctgcgtctgctaacggccacctgcggctacaaggag
gtgcgactgatggctgtccagaggctggagatgtggctgcagaatccaaagctgacgaga
ccagcgcaggacctcctcatgtctctgtgcatgaactgtagaactcacggagctgacgac
atggacgtgatctccaacctcatcaagatccgtctcaagccgaaagtcctcctcaatcat
tacatgctgtgtgtccgggagcttctgaatgcacaccgagataacctgggcaccatgatt
aaactcgtgatctttaacgagctgtccaatgctagaaatcctaacaacatgcaagtgctt
catacggtcctgcagcacagcccagagcaggccccgaagttcctggccatggtattccag
gacctactgaccaacaaggatgattacctgcgagcatctcgtgccctgctcagagagatc
atcaagcagaccaagcatgagatcaacttccagtctttctgtctgggcctcatgcaggag
aggaaggaggcctcgtatgctgacatggagtttaaagagcgttttgttatccaggtgacg
gatctgttaaccgtatccatgatgctgggcatcacagcacaagtcaaagaagctggcatt
gcatgggacaagggagaaaagaagaatctggaagtgctcagagcttttcagaaccagatt
gctgccatccagagagatgctgtttggtggctgcacactgtggttccatctatcagcaaa
ctgggacctaaagactacgtgcactgcctccacaaagtgctgttcacggagcagcctgag
acgtattacaagtgggataactggcctcctgaaagtgaccgaaattttttcctgcggctg
tgttcagaggttcccttgctggaggacacgctgatgcgcatcctggtgatcggcctgtct
cgagacctgcctttgggcccggccgacgcgatggagctggccgatcacttggtgaagaga
gccgcaggagtgcagtcagatgatttggatgtgttgcacgtggagaggattcagctcatc
gatgctgtcctgaacctgtgtacataccatcaccccgagaacatccagctccctgcaggg
tatcagcctccgaatctggccatatcaacactctactggaaagcttggctcctgctgctc
gtggtaacagccttcaacccacagaaaattggtctggcagcttgggatggctactcaact
ctgaaaatgcttatggagatggttatgaccaacaactactcctacccgccatgcacggtg
gctgacgaggagacaaagacggagatgattagccgcgagctacagatctcccagaaggag
cgtcaggagatcctggccttcgagagccacctggcggctgcgtccaccaagcagaccatc
acggagagcaacagcctgctcctgtgccagctcaccagcctggagcccaagggtccacca
cgcagacctccaccacacatccaggaacagctgaagagtctgaaccagtcgctgcgcttg
ggacatctcctgtgccgcagccgcaacccggacttcctcctcaacatcatccagagacag
gcatcttcccagtccatgccatggctggccgacctggtgcagtccagtgaggggtcgttg
gacgtcctgcctgttcagtgcctgtgtgaattcctccttcatgacgcagccgatgacgct
ccgtctgctgacgacgaagaagaaggagagagcaaagagcagaaggcaaagaaaagacag
aggcagcagaaacagagacaactcctaggccggctacaggatctgctgttggggcccaag
gcagacgagcacacgacctgtgaggtgctggactacttcctgcgccgactcagctcctct
caggtggcgtccagagtgcttgccatgaagggtctgtccttggtgctgtctgagggcggg
ataaaggatggagacgagcgggaccatctgatggaggacgactccagggatgcagagctg
cttccttcgtatcagtggctcctgcaggacctgcccagactgccattgttcgacagcgtg
aggggcatgacggccaacgccctgcagcaggccattcacatggagactgatcctcagacc
ataagcgcctatctgatttacctctcccagcatgcaccagtaggagagcagggcctgcac
aatgatctagcactggatgtagcccggctgatagtggagcgctccaccatcatgaacagt
cttttctccaagcactcgtgcaggcccgagtcagacgccacactcactgccctcatctcc
atcttctccacctacatctgtcgtatgaggaagaccaaggaaggagaggatctttacagc
tggtccgagtctcaggatcaggtgtttctgcgctggacgacaggagaaacggctacaatg
cacattctggtggtccatgccatggtcattctgctgacgctaggaccacccaaagaaagc
gagggcgctgcgtcagaggagagctcggaaacacctacacgactgtcagtcatttcgggt
gaaagtgacttcttcactctgctagaaatctggttccccgataaaaaaccccttcctact
gctttcctggtggacacctcggaggaagctcttctcttgcccgattggctaaaactgagg
atgatccgctcggaggtatcccgattggttgatgcagcgctgcaggatttggaaccgcag
cagctgctgctgttcgtgcagtccttcggcattcccgtgtccagcatgagcaaactgctg
cagtacttggaccaagccgtctcccatgacccacagacactggagcagaacatcatggac
aagaattacatggctcatctggtggaggtgcagcacgagagaggagcaacaggcggacac
acgtttcacagtttactcagtgcatcacttccaccccgcagagacagtgcagaggcgagc
agggtgaaagtgaccgtggagactccacacagctcactgaagatgagagccgtgagtcag
atgcctgtcatcagccctgacgacgatctcactactgtcctgctgcagctgtttcctgtg
aagatggacccgcgctggcccacgcccccatcacgccctctggctttggctctgcagcag
gttctcgctcaggaagtgttgcgggcacgaaagggaatgggccagcagggtggcacagct
ccgcgtgtcttacaggccctagcagccgtgtttgggtcggcccacgctgggccactagtc
gtggcaatgcgtcatagccatgccttctcatgccctctgctgcggcagctgcacctctac
cagcagactgcatcccaggatgtggctttcagctcgctcttttttaaggtggtcatgcag
atgttaacctggttggaaagctctgcactggaggcaggcccgcttagcaacctgctgaag
tctctggtcgcacaatattcccacaagcaccacatcactgatgtacgtacagggttcctg
cacctggcggaggcactcacgtacaggcgggactccgaggtggccgtgaggggcatcatc
gcctcgctaagggctggagagaaatgcaatgccgagcctgaactcatcaggaaagtccta
cagggattaatggaggtgaagtcaccgtacctggaggagctgctatccctactcatgact
gttggcatggagacaggagcccccagtaacacagctggccctgttgccatggtgattatg
ctgctgctacaggagaccgaggagagaggggtgaaactggaagcagaatctaaaaccatt
tctgaagggaagagaacgggctccagctcagggctgttggttgattggctggagctgctt
gacccggaggtgacctctgtgtgctcggacctccagcagaaattactcttctcagtgaac
aagggcaaaggctctggactgtgtcctgtcccttcctacaggccctacctgctggctagc
ctcactcaccagtccaactggagcactttgcaccagtgcatcaccacactgctcaacaag
cctaaagagcacagtgtggacccctcctcagctttggatttcctgtgggcctgcagtcat
atccctcgcatctggaaaggcagagaccagaaaactccacagaaacgcaccgagaagttt
gtcttgaagctgaccagtgacgagctgatcagtctggtggatctgatcctgtgggagtcg
gagctgagctggcgcgacaccggcaaagctgatgaaacactggaccaggcctcctgttct
ctcatccagtcccgcctgcccctgctgcacagctgctgccacagcgacccccagaatgtc
cacactgtctgcgagtacctcctcaactgcatcaagaagtggggggacagtgtgatgagc
aggaggtgtgagaacctactgctgcagatatacctccagttccccgaggtcatccagcac
gtgcgtctgcccgatgcgtcactgagcggagaggccgctgccgatggaagcacctgcaag
ctggacatcctggtgcatcgtctcatcacacttatggcagacaccggagagtccaaatcg
gcagagagtcgtgtttcggatgcgactctggcctgcaggaggctggctgtgtcccaccct
gtacttctgctcagacacctgcctatgattgctgctctcttgcatggtcggatccacctg
aacctgcaggagttcaggcagcagcgccatctgaccttcttcagcgacgtactggctatc
ctggagttgcttcagccacgagtctttcactcagaccaccagagggcgctgcaggactgc
ttgttgtcctttattaaagtcctacagaacttaagaagattatcccgtatgccggtcatt
aacaagtttgtgcagttcattcagaaatacattactcacgacgcagcagctgccgtgcct
tatcttcagaagcactctgatattctacagggtcttgcgtccgagaatcccgacctggcg
cagttgaaatccctgctagctggcctcactctgcctgtaaagatgtgctcctcagacgtc
agtgcagaggacagagacgctgacgactcctcctccggctccttgcctctggtcagtatc
tcagcctccacagcactcagctcaacagatatgaccaagtacctgaagaaactttctgga
ggggaatccattgaagatgtgctggacgtgctgactgaggtggacgagaagtcaaagaga
aatccggaaatagtccagtattttgtgaacgatctgcagaggttgatgagttcgcctgag
gagctgtgtcgcaacatggcctttagtctggcgctgcgctgcattcagaacactcccagt
ctggcgtcagacttcctgcccaccttcatgtactgcctgggcagcgggaactttgatgtt
atccaaacagccctgaggaaccttccagaatatgtgctcctctgccaagagcacgctggc
attctgctccacaaggccttcctagtgggcatctatggccagatagacaccagctctgta
atcgcagagtccatgaaggtcctgcacatggaggctacaacatag
DBGET
integrated database retrieval system
