Ictalurus punctatus (channel catfish): 108259200 Help Entry 108259200         CDS       T04658                                  Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu04010   MAPK signaling pathway ipu04120   Ubiquitin mediated proteolysis ipu04140   Autophagy - animal ipu04144   Endocytosis ipu04517   IgSF CAM signaling ipu04620   Toll-like receptor signaling pathway ipu04621   NOD-like receptor signaling pathway ipu04622   RIG-I-like receptor signaling pathway ipu05132   Salmonella infection ipu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:ipu00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     108259200  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     108259200   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     108259200  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     108259200    04140 Autophagy - animal     108259200  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     108259200    04621 NOD-like receptor signaling pathway     108259200    04622 RIG-I-like receptor signaling pathway     108259200  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     108259200   09171 Infectious disease: bacterial    05132 Salmonella infection     108259200  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ipu04131]     108259200    04121 Ubiquitin system [BR:ipu04121]     108259200 Enzymes [BR:ipu01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      108259200 Membrane trafficking [BR:ipu04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     108259200 Ubiquitin system [BR:ipu04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     108259200 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX TRAF6_Z2 zf-C3HC4_4 zf-RING_5 TRAF3_RING U-box RING_XB3-XBAT31 SlyX zf-C3HC4_IRF-2BP1_2 DUF7310 HAUS1 NEAP Spc29 HAP1_N DUF4472 zf-RING_11 PMD1-like zf-TRAF_2 CCDC18_1st zf_UBZ DM ATG16 DUF3450 Motif Other DBs NCBI-GeneID:  108259200 NCBI-ProteinID:  XP_017313922 Ensembl:  ENSIPUG00000022164 UniProt:  A0A2D0Q6J3 LinkDB All DBs Position 27:9917619..9932754 Genome browser AA seq 540 aa AA seqDB search MACGDMHKSNPDEYPFSRCMAEMEKERESYLSPTENPSTISVSSGTQAEQQGYDVDFDPP LESKYECPICLMGLRSAVQTPCGHRFCNSCIKKSIRDTGQKCPVDNEVLTEDQLFPDNFA KREILSLTVRCRNFGCNEKMELRHFENHLKLCEFATVPCLQCNEPVWKNSIEEHMNQECL QRLITCPDCAENIIYANKQFHEQMCPFVNTVCEYCNMEFIRGQLSSHCATDCLKAPVACT FSMFGCQEKMARNDLALHMQEFTQMHMRYMAEFLKNQTMNGIPPAPTCGPSCSSPSEHGA SARVGEPCQCSQDMQQLRETVVELEGRLVRQDHQIRELSIRNDTQHTQLTELRKKLASLE EKMHELEAQQYQGVYVWRIEGFSAHLHQQEAGQPVVLHSPPFYTGRPGYKLCLRLHLQTP SAPRCSNYISLFVHTMQGEFDSQLPWPLQGTIRLAVLDQAECQHHVEIMETKPDLQAFQR PTVLRNPKGFGYVTFMQLQALRQRGFVKDDVLLVRCEVMPRFDTSLRREGMQPRGPEPSL NT seq 1623 nt NT seq  +upstreamnt  +downstreamnt atggcgtgtggtgacatgcataaatccaatcccgatgagtatccattctccagatgtatg gctgaaatggagaaggagagggagtcatacttaagccctacagaaaacccatccacaatt agtgtctcatctggcacccaagcagaacagcaaggctacgatgttgactttgaccctcca ctggagagcaagtacgagtgtcccatctgcctgatgggtctaaggtcagctgtgcagaca ccatgtggccatcgcttctgcaacagctgtattaaaaagtccatcagggacacagggcag aaatgtccagttgacaatgaagtgctgacagaggaccaactttttccagataactttgcc aagagggaaatcctctctctcactgtgcgctgccgcaattttggctgtaatgagaaaatg gagctcagacactttgagaatcacttgaagctctgtgaatttgccacagtgccctgcctg cagtgtaatgagcctgtatggaagaatagtatagaggaacatatgaaccaggagtgttta cagcgcctgatcacatgccctgactgtgcagagaatatcatctatgctaacaaacagttt catgagcagatgtgtcccttcgtgaatacagtgtgtgagtactgtaacatggagttcatt cggggtcagttgtcatcacactgtgccacagactgcctgaaagctcccgttgcctgtact ttcagcatgtttggttgtcaagaaaagatggcaaggaacgacctggcccttcacatgcag gagttcactcagatgcacatgcgctacatggccgagttcctgaagaaccagactatgaac ggcattccgccagctccaacatgtggcccttcgtgttcttccccatctgagcatggtgcc tctgccagggtgggagagccatgccagtgcagccaggacatgcagcagctacgtgagact gttgtggaactcgagggccgcctcgtgcgccaggaccaccaaatacgggagctgagcatt cgcaatgatacacagcatacgcagctaacggagctacgcaagaagctggcgtcgctggaa gagaaaatgcacgagctggaagctcagcagtaccagggtgtctatgtttggcgaatcgag ggattctcagctcacctgcaccaacaagaagccggacaaccagttgtgctccatagccca ccattctacacgggtagaccgggctataagctgtgcctgcgactgcacctgcagacacca agcgcaccacgttgctctaactacatctcgctgtttgtgcatacaatgcagggtgagttt gacagccagctcccatggcccctgcagggcaccatccggctggctgtgctggaccaggct gaatgccaacaccatgttgagataatggagaccaaaccagacctacaggccttccagagg cccacagtgctgcgcaaccccaaaggctttggctatgtcaccttcatgcaactgcaggcg ctgcgccagcgaggctttgtcaaggacgacgtgctgctggtgcgctgtgaggtcatgcca cgtttcgacaccagtctcaggagagagggcatgcaacctcgaggacctgaaccatccctc tga

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