Ictalurus punctatus (channel catfish): 108259449
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Entry
108259449 CDS
T04658
Symbol
cxcl12b
Name
(RefSeq) chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)
KO
K10031
C-X-C motif chemokine 12
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04060
Cytokine-cytokine receptor interaction
ipu04672
Intestinal immune network for IgA production
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
108259449 (cxcl12b)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108259449 (cxcl12b)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
108259449 (cxcl12b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ipu04052
]
108259449 (cxcl12b)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108259449 (cxcl12b)
Cytokines and neuropeptides [BR:
ipu04052
]
Cytokines
Chemokines
108259449 (cxcl12b)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Chemokines
108259449 (cxcl12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IL8
Motif
Other DBs
NCBI-GeneID:
108259449
NCBI-ProteinID:
XP_017314464
Ensembl:
ENSIPUG00000011297
UniProt:
A0A2D0Q836
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Position
27:complement(2600278..2610737)
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AA seq
99 aa
AA seq
DB search
MDVKVVVMMLFLVVTMKDSETEAKPISLLERCWCRSTLNTVPQRSIREIKFLHTPHCPFQ
VIAKLKNNREVCINPKTKWLQQYLKNAISKIKKSRQTDN
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaaagttgtggtgatgatgcttttcctcgttgtgactatgaaggactcggag
actgaagcgaagcccatcagcctgttggagaggtgctggtgccgctcgacgctcaacacc
gtgccacagaggagcatccgcgagatcaaattcctccacacgccccactgccccttccaa
gtcatagccaagctgaagaacaatagggaggtctgcatcaaccccaagaccaaatggctg
cagcagtatctgaagaacgccattagcaagataaagaagtcaaggcagactgataactaa
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