Ictalurus punctatus (channel catfish): 108259587
Help
Entry
108259587 CDS
T04658
Name
(RefSeq) oxysterols receptor LXR-alpha isoform X2
KO
K08536
liver X receptor alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03320
PPAR signaling pathway
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108259587
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
108259587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108259587
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ipu03310
]
108259587
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108259587
Nuclear receptors [BR:
ipu03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
108259587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
108259587
NCBI-ProteinID:
XP_047007562
Ensembl:
ENSIPUG00000019883
UniProt:
A0A2D0Q8R6
LinkDB
All DBs
Position
27:11708411..11731263
Genome browser
AA seq
446 aa
AA seq
DB search
MMTTLSATDIADVGHGANLGCVTEEDSVRAAEVKHELHTSPSQPVSFTSSPKEPRETLHM
DPSDIKLDPSADTPAREGQPVKRKKGPAPKMLGNEVCSVCGDKASGFHYNVLSCEGCKGF
FRRSVIKGAQYICKNSGRCEMDMYMRRKCQQCRLRKCREAGMLEQCVLSEEQIRLKKMKK
QNEEETARSSAVAAPSPAADVLPLAPEQQEMIEKLVAMQKQCNKRSFIDRRKVTPWPQSQ
DPMNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFLELTREDQIALLKTSTIEIMLLET
SRRYNPAIESITFLTPDFSYNKDDFAKAGLQIEFINPIFEFSKGMNDLHLDEAEYALLIA
INIFSADRPNVQDHDLVEKLQQPYVDALHSYIRIKRPNDHLMFPRMLMKLVSLRTLSSVH
SEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccaccctttctgcgactgatattgctgatgttggtcatggggcgaatctgggg
tgtgtcactgaggaggactcagtgagagcagcagaagtgaaacatgagttacacacttct
cccagtcaaccagtttcattcaccagttctcctaaagagccgagagagacgctgcacatg
gaccccagcgacatcaaactggatccctctgcagacacacctgcaagagaggggcagcca
gtgaagaggaagaagggtccagctcccaagatgctggggaacgaggtgtgtagtgtgtgt
ggagacaaggcctctggtttccactacaatgtactgagctgtgagggctgtaagggcttc
ttcaggcgcagcgtgatcaaaggagcgcagtacatctgcaagaactcgggccgctgtgag
atggacatgtacatgcgccgaaagtgtcagcagtgtcggctgcgcaagtgtcgggaggcg
ggcatgcttgagcagtgtgtgctttcggaggagcagattcggttgaagaaaatgaagaag
cagaacgaggaagagacagctcgtagctcagccgtggctgcaccgagcccagcggctgac
gttctccctttggctccagaacagcaggaaatgatcgagaagttagtcgccatgcagaaa
cagtgcaacaaacgctccttcatcgaccggcgcaaagtcactccatggccgcagagtcag
gaccccatgaaccgggaagtgcggcagcagcgctttgctcatttcaccgagctggcaatc
atgtcggtgcaggagatcgtggactttgctaaacagctgcctggtttcctggagctcacc
cgtgaggaccagattgccctgctcaagacctccaccattgagatcatgctgctagagacg
tctcgccgctacaatccagcgatcgagagcatcactttcctcacgccagacttcagctac
aacaaggatgactttgccaaagcagggctgcagatcgagttcattaaccccatctttgag
ttctcaaagggcatgaatgacttgcacctggatgaggcagagtatgcgctgcttatcgct
ataaacatcttttcagcagaccgacccaacgtgcaggatcatgatttggtggagaagctc
caacagccgtatgtggatgctctgcattcgtacatcaggatcaagagaccaaatgatcac
ctgatgttcccacgtatgctgatgaagctggtcagcctgcgcaccctgagtagtgttcac
tctgagcaggtcttcgctctgcgactacaggacaagaaacttccccctcttctgtctgaa
atctgggatgtccatgaatga
DBGET
integrated database retrieval system
