Ictalurus punctatus (channel catfish): 108259843
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Entry
108259843 CDS
T04658
Name
(RefSeq) spectrin family protein isoform X1
KO
K23932
spectrin beta, non-erythrocytic 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04517
IgSF CAM signaling
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108259843
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108259843
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108259843
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108259843
Intermediate filaments
Intermediate filament-binding proteins
108259843
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
PH_17
Motif
Other DBs
NCBI-GeneID:
108259843
NCBI-ProteinID:
XP_017315050
Ensembl:
ENSIPUG00000021254
UniProt:
A0A2D0QCE0
LinkDB
All DBs
Position
28:complement(2192303..2262214)
Genome browser
AA seq
2379 aa
AA seq
DB search
MSAISPTDFDSVEIQQQYNDINNRWELAAEAEWDNENSSARLFERSRIKALADEREAVQK
KTFTKWVNSHLGRVTCRISDLYTDLRDGRMLIRLLEVLSSEQLPKPTKGRMRIHCLENVD
KALQFLKEQKVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKD
ALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLIEFDTLKRSNAHYNLQNA
FNIAEKEMGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMKALAVEGKRIGKVLDYA
IEADQLIEKYETLASELLQWIEQTIVTLNDRQLANSLSAVQNQLQAFNTYRTVEKPPKFT
EKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQ
EKLEMLAARFDRKAAMRETWLSENQRLVSQDSFGFDLGAVEAATRKHEAIETDIGAYGER
VAAVEAVARELDAEGYHDVRRILARRDNVLRLWEYLKELLAARRERLTAHRDLQRLLQEM
SYIMDWMEDMKGRLQSQDSGKHLHDVEDLLQKHTLVEADISAQAERIRAVQAAANRFTSD
EMTYKPCEPALVEEKVALLGQAYEELGRLAAERRAQLEDSRRLWQLLWELGEEAAWMREQ
EQIMATEECGKDLSSALRLLSKHEAFRDEMAARYGPLGSSIASGEQLVKEGHCGAPEITE
RIKDIKAQWERLEEASRLREQRLKESVALHQFQTDANDMEAWLQEALRQVSSQEVGHDEF
STQTLARKQKEVEEEIQSHRSLIDSLHEQAQSLPSEYAHSPQVEGRLPAIEQRYEELKAL
SLARRDALEGALALYRMYSEADACQLWIGEKEQWLLTMEIPSKLEDLEVVQQRFETLEPE
TNNLGSRIADVNQVAEQLLKSDSRNKEQINQTQDQLNDRWREFQRLADDRKQALESALNI
QNYHLECNELQSWMKEKTKVIESTQGLGNDLAGVMALQRKLTGMEKDLEAIQGKLGGQRA
EAEQLVSEHPEQAEEIRARLADMEEVWEELCGTMKKREEGLGEASKLQGFLRHLDDFQAW
LSRTQTAVASEDTPTSLAEAEQLLAQHDSIKNEVDNYRDDYERIKATGAEVTQGQTDAQH
MFLAQRLQALDTGWQDLRRMWESRQCLLAQAFDFQTFLRDAKQAESFLNNQEYVLSHTEM
PSSLQGALEAIKKHEDFLTTMEASEEKINGVVESGRRLVSDGNANADKIQEKADSIEERH
QKNKQAANELLGKLKDNRELQHFLQDGQELTLWINEKMLTAQDMTYDEARNLHSKWQKHQ
AFMAELASNKDWLDKIDKEGQALVKEKPELEETVSETLRELQKQWELLETTTQTKAQCLF
DANRAELFTQSCSALDTWLQNLSTQLQSDDFGKDLTSVNILLKKHQMVEHQMDVREKEVQ
SLQSQALALSPEDAGIAEVDGQQRRVTDTFAQLQEPLNQRRQRLLASKEAHQFNRDLEDE
ILWVKERMPLATSTDHGKDLPSVQLLIKKNQTLQKEIQGHQPRIDDLQAHGAAPGAEVGG
ERRAALDERLNELGELWARLISETEQRHARLVEAHRAQQFYADAAEAEAWMGEQELHMMS
EEKAKDEQSALVMVKKHQILEQALEDYAQTIHQLANSSRLMVDGEHPESERIALRQAQVD
KLYAGLKDLAEERRGKLQERLRLTQLKREVDDLEQWIAEREVVAGSHELGQDYEHVTMLR
DRFREFARDTSAIGQERVDAVNAQADALIESGHPENASVAEWKDGLNEAWADLLELMDTR
TQMLAASYELQRFQQDAREALARVRNKREALNSAELGRDLNTVQHLHRQHTAYEHDVHAL
SGQVTQVQDDAARLQKAYAGEKADDIHRHERAVTEAWEGLLAATQARRLLLLDTVEKFRF
FSMVRDLMLWMDGINLQIQSHDSPRDVSSAGLVIAHHQDIKAEIEARSGSFIACNDMGRA
LIDNNHYASDEIREKLVQLQEKRDEINQKWQDKMDHLQIVLEVLQFSRDASVAESWLAGQ
EPLVRAAELGSNVDEVESLIKRHEAFEKLAAGWEERFTQLEKLTTLEEQEIQRRKEEEER
ARRPPTPPPVEDVVQSETEFESGARTSLDQTTLNQSVSVNGVHSDQDTSQSLMVSVSELP
NAEHKPVTKPVPKPYKAQQRGSEADSVNGPGQDSGLDTASRHEPSGTLPIRVGPVLEAME
GMLCRKHEMESQGKKAANRSWQNVYCLLRKGSLGFYKDNKSASNGIPYHGEVPISLGEAT
CEIAHDYKKRKHVFKLRLGDGKEFLFQAKDEAEMSSWIRAIHSSMPANDAEDLSPAPPLT
RAMTMPPMSPSEGEGVTMRNKEGKEKDREKRFSFFGKKK
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgatatcgccgacggatttcgacagcgtggagatccagcagcagtacaacgac
atcaacaaccgctgggagctggcggccgaggccgagtgggacaacgagaacagctcagcg
cgcctgttcgagcgctcgcgcatcaaagccctcgcagacgagcgagaggccgtacagaag
aagaccttcaccaagtgggtgaactctcacctgggccgcgtgacctgcaggatcagcgac
ctgtacacggacctgcgggatggacgcatgctcatccgactgctcgaggtgctctcgtcc
gagcaactgccgaagcccaccaaaggtcgcatgaggatccactgtttggagaatgtggat
aaagcgctgcagttcctcaaagagcagaaggtccacctggagaacatggggtctcacgac
atcgtcgacggcaaccaccgcctcacactcggcctcatctggaccatcatcctgcgcttc
cagattcaggacatcagcgtggagacggaggacaacaaggagaagaaatctgccaaagac
gccttactgctgtggtgccagatgaagacggctgggtacccgaatgtcaacgtgcacaac
ttcaccaccagctggagagacggcctggcattcaacgccatcgtgcacaaacacaggccg
gacctgattgagttcgacacgctgaagcgctccaatgctcattataacctgcagaacgcc
ttcaacatcgcagagaaggagatggggctcaccaaactgctggatcctgaggatgtgaac
gtggatcagccggacgagaagtcgatcatcacctacgtggccacctactaccactacttc
agcaagatgaaggcgctcgccgtggaaggcaagcgaattggcaaggtgctggactacgca
atcgaggcggaccagctgatcgagaagtacgagacgttggcctcggagctgctgcagtgg
atcgagcagaccatcgttacactcaatgaccggcagctcgccaactccctgagcgccgta
cagaaccaactgcaggccttcaacacctaccgcaccgtggagaaaccccccaaattcaca
gagaaggggaatttggaggttctcctgttcaccatccagagcaaaatgagggccaacaac
cagaaagtctacatgcctcgagagggaaaactcatttctgacatcaacaaggcgtgggag
cgtctggagaaggcggagcacgagcgtgagctggccctgaggaacgagctgattcgccag
gagaagctggagatgttggcggcgcggttcgaccgcaaagccgccatgagggagacgtgg
ctcagcgagaaccagcgcctcgtctcgcaggacagcttcggtttcgatctcggcgcagtg
gaggcggcgacacgcaagcacgaggccatcgagacggatatcggcgcgtacggcgagcgc
gtggctgccgtggaagctgtggcccgcgagcttgacgccgaggggtaccatgacgtgcgg
cgcatcctggcgcgtcgcgacaacgtactgcgcctctgggagtacctgaaggagcttctc
gcggccaggcgcgaaaggctcacggcacaccgggacttgcagaggctcctgcaggagatg
agctacattatggactggatggaagacatgaagggtcgtttgcagtcacaagacagcggg
aaacaccttcatgacgtggaggacttgctccagaaacacactcttgtggaggcagacata
tcggcgcaggcggagaggatccgggcggtgcaggccgcagcgaatcgcttcacctcggac
gaaatgacctataagccgtgcgagccggcgctggtggaggagaaggtggcgctcctgggc
caggcatacgaggagctgggcaggctggcggccgagcgccgcgcacagctggaggactcg
cggcgtctctggcagctgctgtgggagctcggcgaggaggcggcttggatgcgtgagcaa
gaacagatcatggcaacggaggagtgcgggaaggacctgtcgtccgccctgagactcctc
tccaagcacgaggcgttccgggacgagatggccgcccgctacggcccgctggggagcagc
atcgcctctggagagcagctggtgaaggaggggcactgcggagcaccagagatcacggag
aggatcaaagacatcaaagctcagtgggagcgactggaggaggcatctcgtttgcgagag
cagcgtctgaaggagtctgtagctttgcaccagttccagaccgacgccaacgatatggag
gcatggctccaagaggctctcagacaggtatccagtcaggaggtcggccacgacgagttc
tcgacacagacgttggcgcggaaacagaaggaggtcgaggaggagatccagagccatcgc
tctcttattgactcgctgcacgagcaggctcagtcactgccttcagaatacgctcactct
ccacaggtggagggtcgtctccctgctatagagcagcgctacgaggagttgaaggctctg
tccttggcacggcgtgatgccctggaaggggctctggcactgtaccggatgtacagcgag
gccgacgcctgccagctgtggatcggcgagaaggagcagtggctcctgaccatggagatc
ccctccaaactcgaggacctagaggtggtccagcagaggttcgagactctggagccggag
acgaataatctcggctctcgcattgccgacgtgaatcaggtcgccgaacagctgctcaaa
tccgacagccgcaacaaggaacaaattaaccagactcaagaccaactcaacgacaggtgg
cgcgagttccagcggctggcggacgatcggaagcaggctctggaatcggctctgaacatc
cagaactaccacttggagtgtaacgagctccagagctggatgaaggagaagaccaaagtg
atcgaatccactcagggtctcggcaacgacctggccggggtcatggccttacagcgcaag
ctcacgggcatggagaaagacctggaggccatacaggggaagctgggcgggcagcgcgcc
gaggccgagcaactggtgtccgaacaccctgaacaggctgaggagatccgggcgcggctg
gccgacatggaggaagtgtgggaggagctgtgcggcaccatgaagaagcgcgaggagggt
ctgggcgaagcctctaagctgcagggcttcctgcgccacctcgacgacttccaggcctgg
ctctcgcgcacacagaccgctgtggcgtctgaggacacgcccacctcgctcgccgaggcg
gagcaactcctggctcagcatgattccatcaagaacgaggtggacaactaccgcgacgac
tacgagaggatcaaggccactggcgcggaggtgacccagggccagacggacgctcagcac
atgttcctggcgcagcggctgcaggctctggacacgggctggcaggatctgcgtcggatg
tgggagagcagacagtgcctgctggcccaggccttcgacttccagaccttcctcagagac
gccaagcaggccgagagcttcctcaataaccaggagtatgttctgtcgcacactgagatg
ccatcgagcctgcagggggcactggaggccatcaagaagcacgaggacttcctcaccacc
atggaggccagcgaagaaaagatcaacggagtggtggagtcagggcggcgccttgtttcc
gatggcaacgccaatgccgacaagatccaggagaaagccgactccatcgaagagaggcac
cagaagaacaaacaggccgctaacgagctgctgggtaaactgaaggataacagagagcta
cagcacttcctccaggatggacaggagctgactctgtggattaatgagaagatgttgaca
gctcaggatatgacttacgacgaggccaggaacctgcacagcaagtggcagaaacaccaa
gccttcatggccgagctggcctccaacaaggattggctggacaaaatcgataaggagggt
caggctctggtgaaagagaagcctgagctggaggagacggtgtccgagaccctgcgtgag
ctgcagaagcagtgggaattgttggagaccaccacgcagaccaaggcacagtgtctgttc
gacgccaaccgcgccgagctcttcacccagagctgctcggctctcgacacgtggctgcag
aacctctccacacagctgcagagcgacgacttcggcaaggacctgaccagcgtcaacatc
ctgctcaagaaacaccagatggtggagcaccagatggatgtgcgggagaaggaggtgcag
tctctgcagtcgcaggctctggccctgtctccggaggatgccgggatcgcggaggtggac
gggcagcagaggagagtgacggacaccttcgctcagctccaggagcctctcaatcagagg
cgacaacgcctgctcgcgtctaaagaggcccaccagtttaacagagacctggaggatgag
atattgtgggtgaaggagagaatgccgctggctacatccacagatcacggcaaagacctt
cccagcgtccagctgctcatcaaaaagaaccagaccctgcagaaggagatccagggccac
cagcctcgcatcgacgacctgcaggcccacggggcggcccccggggcggaggtgggtggg
gagcggcgggcggcgctggacgagcgtctgaacgagctcggggaactgtgggcgcggctc
atctcggagacggagcagagacacgcgcgcctagtggaggcccatcgcgctcagcagttc
tacgcggacgctgccgaggctgaggcctggatgggagagcaggagctgcacatgatgtcc
gaagagaaggccaaggatgagcagagcgctttggtgatggtgaagaagcaccagatcctc
gagcaggccctggaggattacgctcagaccatccaccagctggccaacagcagcagactc
atggtggatggtgaacatcctgagagcgagcggattgcactgaggcaggctcaggtggac
aagctgtacgccggactgaaggacctggccgaggagaggagggggaagctgcaggagcgt
ctgcgtctcacgcagctgaagcgagaggtggacgatctggagcagtggatcgccgagaga
gaggtggtcgccggctcgcacgagctcggccaggactacgagcacgtcactatgctgcgg
gatcgtttccgggagtttgcgcgggacacgagcgcgatcggacaggagcgcgtggacgcc
gtgaacgcccaggcggacgccttgatcgagtcgggccacccagagaacgccagcgtggcc
gagtggaaggacggcctgaacgaggcctgggccgacctgctggagctcatggacacgcgc
acgcagatgctagccgcgtcgtacgagctgcagcgcttccagcaggacgcccgcgaggcg
ctggcgcgagtccgcaacaagagggaggcactgaactcggccgagctgggccgcgacctc
aacaccgtgcagcacctccaccggcagcacacggcctacgagcatgacgtgcacgcacta
agcggacaggtgacacaggtacaggacgacgcggcgcgtctgcagaaagcctacgccggt
gagaaggcggacgacatccatcgacacgagcgcgcggtcaccgaggcgtgggaggggctc
ctggccgccactcaagccagacggctgctgctactggacacggtggagaagttccgcttc
ttcagcatggtccgagatctgatgctgtggatggacggcattaacttacagatccagtct
cacgacagccccagggacgtgtcgtcggccgggctcgtcatcgcgcaccaccaggacatt
aaagcagagatcgaggcccgatcaggcagcttcatcgcctgcaacgacatgggacgcgcc
ctcatcgacaacaaccactacgcttctgacgagatccgtgagaaactggtgcagcttcaa
gagaagagagacgaaatcaaccagaagtggcaggacaaaatggaccatctgcagattgtc
ctggaggtgctgcagttcagcagggacgcctcggtggctgagtcgtggttggcgggtcag
gagccgctggtgcgcgcggccgagcttggctccaatgtggacgaggtggagagcctcatc
aaacgacacgaagccttcgagaagctcgctgctggctgggaggaacgtttcactcagctc
gagaagctcaccacgctggaggaacaggagattcagagaaggaaggaagaagaggagaga
gcgcggagaccgccgacgcctcccccagtagaggatgtggtacagtctgagacggaattc
gagtccggagcgaggacgagtttggaccagaccaccctgaaccagtcagtgtctgttaac
ggagtccacagcgaccaggacacgtcacagtccttaatggtctcagtatctgaactcccg
aacgcggaacataaacctgttacgaaacccgtgcccaaaccctacaaggcacagcagcgt
ggctcggaggcggactcggtgaacggccccggccaggacagcgggttggacacggcgtca
aggcacgagccgtcgggcacgctgcccatccgagtcgggccggtcctcgaggccatggag
ggaatgctgtgcaggaaacatgaaatggagagccagggcaagaaagcagccaacagatcg
tggcagaacgtgtactgcttgctgaggaagggaagtctgggcttctataaggacaacaag
agcgcatctaacggcatcccctaccacggagaagttcccatcagcctcggcgaggccacc
tgcgagatcgcccacgactacaagaagagaaaacacgtcttcaagctgaggctgggagac
ggaaaggagttcctgttccaagccaaggacgaggctgagatgagttcctggatacgggcg
atccactcctccatgccggcaaacgacgctgaagacctgtccccggcaccgcccctgaca
cgggccatgacgatgcccccaatgtcccccagcgagggcgaaggcgtgaccatgcgtaac
aaagagggcaaggagaaagaccgagagaaacgcttcagcttcttcggcaagaagaagtaa
DBGET
integrated database retrieval system
