Ictalurus punctatus (channel catfish): 108260470
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Entry
108260470 CDS
T04658
Symbol
pdgfbb
Name
(RefSeq) uncharacterized protein pdgfbb isoform X1
KO
K04359
platelet-derived growth factor subunit A
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04010
MAPK signaling pathway
ipu04020
Calcium signaling pathway
ipu04510
Focal adhesion
ipu04540
Gap junction
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108260470 (pdgfbb)
04020 Calcium signaling pathway
108260470 (pdgfbb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108260470 (pdgfbb)
04540 Gap junction
108260470 (pdgfbb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
108260470 (pdgfbb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ipu04052
]
108260470 (pdgfbb)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108260470 (pdgfbb)
Cytokines and neuropeptides [BR:
ipu04052
]
Cytokines
Growth factors (RTK binding)
108260470 (pdgfbb)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Growth factors/receptors
108260470 (pdgfbb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
108260470
NCBI-ProteinID:
XP_017316275
Ensembl:
ENSIPUG00000002192
UniProt:
A0A2D0QFX9
LinkDB
All DBs
Position
2:30218134..30235296
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AA seq
581 aa
AA seq
DB search
MSTGLCWLRALLLAACLCFGSAERDPLPVALAELMKSGSVSSTEDLQLLLLSDSVDDDPE
SDHANNTNNRLPRSLLGKREYTIPPTQRARPTSFFLAPTQDHRDNNRMKVLSPHSEANAP
PAQQAQCKVRTEVMEVTRSMLDRSNANFLLWPPCVEVQRCSGCCNTKTLKCVAVLTHTRH
LQVMKIQYVNMRPVYNKAVVSVNDHVECRCQPVPRPASRRKSPAHKQEARDRAGKPRNKD
ELHRRDELKPNQRLKLEDLLSHSWLPLENGDDAWSHNKTHHGKSRGHSLGDERKYNSSSN
GTNGWSSERLANPLPNDIKREDTGLLLHNVTRARERVREKEAKDVEIQKNSTISDDRLTN
QSLVNGVGPTEITNQIPQHESELVQCAGHSKSAESSQVHRNETTSQMETTQNQTHSEAHV
GQTNQTMVPKPAEKTNQKQGHAFNAEKEPSTRIKGNETPEMESTQEEMEGTRSSSTLLKE
RKALEEEKEELLLLHKRLDEEKHKHFLKAQQHSQHEDQKQQQPHPKPQQTHTTTQRTESR
TSTPVRVSTPHTHPRLPPHPPKRLRKHRNRISKAVMRAMLM
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgggctctgctggctgcgcgcgctgctgctcgcggcgtgtctgtgcttcggc
agcgcagagagggatcctctccctgtagctctggctgagctgatgaagagtggctctgtc
tcctccacagaagatctgcagctgttgctgctctctgactccgtagatgatgatccagag
agcgaccatgccaacaataccaacaatcggctgccaaggagccttctggggaaaagagaa
tataccatccctcctacccagagagcaaggccaacttcttttttcttggctcccacccaa
gaccatcgggacaacaataggatgaaggttttatcgccccactcagaagccaatgctccg
ccagcgcagcaagcccagtgtaaggtgaggacagaggtcatggaggtcacccgctctatg
ctggaccgtagcaatgctaactttctgctatggccaccatgtgtggaggtgcaaagatgc
tctgggtgctgcaacacaaaaacccttaaatgtgtagctgtactcactcacacgcgccat
ctacaggtgatgaagattcagtatgtgaacatgcgcccggtctacaataaagccgtagtc
tcagttaacgatcatgtggagtgccgctgtcagcctgttcctcgtccagcctcgcgcaga
aagtctcctgctcacaaacaagaagcaagagatcgcgcaggtaaacctcgcaataaagat
gagcttcaccggagagatgagcttaaacccaaccagaggcttaaactagaggatctgcta
agccacagctggctgcccctagaaaatggagacgatgcctggagccataataagacgcac
catggaaagagcagaggtcattcccttggagatgagaggaagtataacagcagctccaat
ggcacaaatggctggtcttctgagagactggcaaatcctctgcccaatgatattaagaga
gaagatacaggtttactactacacaatgtgacaagggcaagagagcgagtgagagagaaa
gaggccaaagatgtagaaatacagaaaaacagtacaataagtgacgataggctgactaat
cagtcattagtgaatggggtcggccccactgaaataaccaatcagattccacagcatgag
tcagagctagtacaatgtgcaggccacagcaaaagtgccgagagcagtcaagtacataga
aacgagactacttcccaaatggagaccacccagaatcaaacacacagtgaagcacatgtt
gggcagacaaatcagactatggttcctaaacctgcagagaaaaccaatcaaaagcaaggc
catgcctttaatgcagaaaaagaacctagtacaaggataaaaggaaatgagactccagaa
atggagagcactcaagaggagatggaggggaccagaagcagttccactttgctaaaggaa
aggaaggctttagaggaggaaaaagaggagctgctgttacttcacaagcgccttgatgaa
gaaaagcacaaacatttcctgaaagcccaacaacacagccaacatgaggaccaaaagcag
cagcagccacaccccaaacctcagcaaacccacacaactacacaacggacagaaagcaga
acatctaccccagtcagagtgtccacgccacacacacaccccagattgccccctcatcca
ccaaagagattgaggaaacaccgcaaccgcataagcaaggccgtcatgagggccatgctc
atgtag
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