Ictalurus punctatus (channel catfish): 108261109
Help
Entry
108261109 CDS
T04658
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein
KO
K06531
poliovirus receptor-related protein 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03266
Virion - Herpesvirus
ipu04514
Cell adhesion molecules
ipu04520
Adherens junction
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
108261109
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108261109
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108261109
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108261109
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ipu04515
]
108261109
04090 CD molecules [BR:
ipu04090
]
108261109
Cell adhesion molecules [BR:
ipu04515
]
Immunoglobulin superfamily
Nectin family
108261109
CD molecules [BR:
ipu04090
]
Proteins
108261109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2-set_2
V-set
Ig_3
ig
Ig_2
I-set
C1-set
Motif
Other DBs
NCBI-GeneID:
108261109
NCBI-ProteinID:
XP_053542976
UniProt:
A0A9F7RIK4
LinkDB
All DBs
Position
2:complement(5693480..5767389)
Genome browser
AA seq
1071 aa
AA seq
DB search
MMKCLYLLSVVFHVAAGVLTQKVKVDPEVVSYPGQTVILCCQFPDKGQTQLTQVSWILEN
SSATKTNIAVFHPTFGVSYPASPVQGRVSFTKEPPPLEHPTIQITDIALTDEGNYVCEYA
TYPTGIENGVTALVILAKPQNTASTITVPAGTSPVSVAQCVSANGRPPATLTWVTNLSGN
GTGLVQTSNSDNTVTVRSEYLFTPTAADNGKEITCVVSHRTLTKAENFPMKLVVQYPPQV
QIVGYDNNWYVGRTDVVLTCQYQGNPSPPTVNWKMSSGFMPDSVEMAQNKLTVRKVDDSV
NTTFICEVTNSLGIGKDQVTVFVRGVLTQKVKVEPEVVSYPGQTVILCCQFPDKGQTQLT
QVSWILENSFATRTNIAVFHPTFGVSYPASPVQGRVSFTKEPPPLEHPTIQITDIALTDE
GNYVCEYATHPTGNENGVTALVILAKPQNTASTITVPAGTSPVSVAQCVSANGRPPATLT
WVTNLSGNGTGLVQTSNSDNTVTVRIEYLFTPTAADNGKEITCVVSHRTLTKAENFPMKL
VVQYPPQVQIVGYDNNWYVGRTDVVLTCQYQGNPSPPTVNWKMSSGFMPDSVEMAQNKLT
VRKVDDSVNTTFICEVTNSLGIGKDQVTVFVRGVLTQKVKVELEVVSYPGQTVILCCQFP
DKGQTQLIQVSWILENSSATRTNIAVFHPTFGVSYPASPVQGRVSFTKEPPPLEHPTIQI
TDIALTDEGNYVCEYALYPTGNENGVTALVILAKPQNTASTITVPAGTSPVSVAQCVSAN
GRPPATLTWVTNLSGNGTGLVQTSNSDNTVTVRSEYLFTPTAADNGKEITCVVSHRTLTK
AENFPMKLVVQYPPQVQIVGYDNNWYVGRTDVVLTCQYQGNPSPPTVNWKMSSGFIPDSV
EMAQNKLTVRKVDDSVNTTFICEVTNSLGIGKDQVTVFVRVGRRETSTHSRKTDTTPSSE
PPQSKTTNSPPASTTVKQDKPDSSLPLVFCILAVLLLVIPGVVAIICWRRKGGRCGENVI
TEGRPDCKRKRKDQTEPDVTYATVTHVNTAGTARVQINAADNTEYASILTR
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagtgcttgtatcttttgtctgttgtgtttcacgtcgctgcaggcgtattgact
cagaaggtgaaggtggatccggaagtggtgtcctatccgggtcagacagtgatcctgtgc
tgccagtttcctgacaaaggccagacccagctcactcaggtgtcctggattttagaaaat
agctctgccactaagaccaacattgcagtgtttcatccaactttcggggtcagttaccca
gcatccccagtgcaggggcgtgtgagtttcacaaaagaacccccccctctggaacatcca
actatccagatcacagacattgctctgacagatgaggggaattacgtctgcgagtacgcc
acatacccgaccggaatcgaaaatggggtaaccgccctcgtcatactagccaagccccag
aacacggcttccaccatcaccgttcccgccggcacttctcccgtctctgtagcgcaatgt
gtgtcggccaacggacgaccaccggcaaccctcacctgggtgactaatctgagcggcaac
gggacaggactggtccagacgagcaactcggacaacacggtgacggtgcgcagcgagtac
cttttcacgcccacggcggccgataatggcaaggagatcacctgcgtggtgtcacatcgc
acactgaccaaagctgagaacttccccatgaaactggtggtccaatatcctcctcaggtg
cagattgtaggatatgacaataactggtatgtaggccgtacagacgtggtgctgacctgc
caatatcaggggaaccccagtcctcccactgtaaactggaagatgagctcaggctttatg
ccagactcggtggagatggcccagaacaaactaaccgtacggaaggtggacgactctgta
aataccacgtttatctgcgaggtgacaaacagcctcggcatcggcaaggaccaggtcact
gtgttcgtcaggggcgtattgactcagaaggtgaaggtggagccagaagtggtgtcctat
ccgggtcagacagtgatcctgtgctgccagtttcctgacaaaggccagacccagctcact
caggtgtcctggattttagaaaatagctttgccactcggaccaacattgcagtgtttcat
ccaactttcggggtcagttacccagcatccccagtgcaggggcgtgtgagtttcacaaaa
gaacccccccctctggaacatccaactatccagatcacagacattgctctgacagatgag
gggaattacgtctgcgagtacgccacacacccgactggaaacgaaaatggggtaaccgcc
ctcgtcatactagccaagccccagaacacggcttccaccatcaccgttcccgccggcact
tctcccgtctccgtagcgcaatgtgtgtcggccaacggacgaccaccggcaaccctcacc
tgggtgactaatctgagcggcaacgggacaggactggtccagacgagcaactcagacaac
acggtgacggtgcgcatcgagtaccttttcacgcccacggcggccgataatggcaaggag
atcacctgcgtggtgtcacatcgcacactgaccaaagctgagaacttccccatgaaactg
gtggtccaatatcctcctcaggtgcagattgtaggatatgacaataactggtatgtaggc
cgtacagacgtggtgctgacctgccaatatcaggggaaccccagtcctcccactgtaaac
tggaagatgagctcaggctttatgccagactcggtggagatggcccagaacaaactaacc
gtacggaaggtggacgactctgtaaataccacgtttatctgcgaggtgacaaacagcctc
ggcatcggcaaggaccaggtcactgtgttcgtcaggggcgtattgactcagaaggtgaag
gtggagctggaagtggtgtcctatccgggtcagacagtgatcctgtgctgccaatttcct
gacaaaggccagacccagctcattcaggtgtcctggattttagaaaatagctctgccact
cggaccaacattgcagtgtttcatccaactttcggggtcagttacccagcatccccagtg
caggggcgtgtgagtttcacaaaagaaccccctcctctggaacatccaactatccagatc
acagacattgctctgacagatgaggggaattacgtctgcgagtacgccctatacccgacc
ggaaacgaaaatggggtaaccgccctcgtcatactagccaagccccagaacacggcttcc
accatcaccgttcccgccggcacttctcccgtctccgtagcgcaatgtgtgtcggccaac
ggacgaccaccggcaaccctcacctgggtgactaatctgagcggcaacgggacaggactg
gtccagacaagcaactcggacaacacggtgacggtgcgcagcgagtaccttttcacgccc
acggcggccgataatggcaaggagatcacctgcgtggtgtcacatcgcacactgaccaaa
gctgagaacttccccatgaaactggtggtccaatatcctcctcaggtgcagattgtagga
tatgacaataactggtatgtaggccgtacagacgtggtgctgacctgccaatatcagggg
aaccccagtcctcccactgtaaactggaagatgagctcaggctttataccagactcggtg
gagatggcccagaacaaactaaccgtacggaaggtggacgactctgtaaataccacgttt
atctgcgaggtgacaaacagcctcggcatcggcaaggaccaggtcactgtgttcgtcagg
gtaggaagaagagaaacttcaacacactcgaggaaaacagacacaacaccttcatcagaa
ccgcctcagagtaaaacaacaaactctccacctgcatcaacaacagtaaaacaagataaa
ccagacagcagcctccctctagttttctgcattctggcggttttattgttggtgataccc
ggtgtagtggcaattatttgttggagacgcaaaggaggaagatgtggagagaacgtgatt
actgaaggacgtccggactgtaagagaaagcggaaggatcagactgaacctgatgttact
tacgcaactgtaacccacgtgaacacagccggaacagcacgggtccagatcaacgctgca
gacaacactgaatatgccagcattctaacaagataa
DBGET
integrated database retrieval system
