Ictalurus punctatus (channel catfish): 108263709
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Entry
108263709 CDS
T04658
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108263709 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108263709 (c9orf72)
Membrane trafficking [BR:
ipu04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
108263709 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
DUF7645
Motif
Other DBs
NCBI-GeneID:
108263709
NCBI-ProteinID:
XP_017320260
Ensembl:
ENSIPUG00000007366
UniProt:
A0A2D0QRB4
LinkDB
All DBs
Position
3:14583523..14593174
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AA seq
462 aa
AA seq
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MSTGCPPQSPSVAKTEVVVEGWCPLLAATFAYWDNILGPRVWHIWAPKGQGSMLLSDSEV
TFLANHTLNGEILRSAESGAVDVKFFVLAEKGVIIVSLIFDGELKGDKNTCALSIILPQS
ELDFYLPLHSVCVERLKHTVRKGRIYMQKGYGIIALLTSEIVPIMELLSSMKTHSAPDEV
DIKDTLLNDDDIGDSCHEDFLHKAVNSHLQTCGCSVVVGSNPDKVNKIVLTLCLFLTPAE
RKCSRLCRADGTFKYDTGLFVQGLLKDSTGSVVLPYRQVLSSPYPSTHIDVDINTVKQMP
PCHEHTYHQRRYMRAELSALWKTTSEDEFSPEQLINIQESFTPDLNIFQDVMHKDTLVKS
FIDEVFLLKPGLNLRSVYLSHFLLLLHRKALTLLRYIEDDTQKGKKPFRSLRNLKTDLDL
TVEGDLNIIMAMAEKLRPGLHSFVFGKPFFTSVQERDILMNF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtctactggttgcccaccacagtctccatctgtggctaaaacagaggtggtggtggaa
ggatggtgccccctattggcagccacctttgcctactgggacaacatccttggaccccga
gtatggcacatctgggcccccaaaggtcaggggtcgatgttactcagtgacagcgaggtg
actttcctggcaaatcacacactgaacggtgagattctgcgcagtgcagagagtggtgcc
gtggacgtaaagttcttcgtcttggcagagaaaggcgtgatcatcgtgtcactgatattt
gatggcgagttaaagggtgacaagaacacgtgcgcgctgtccatcattctcccccagtca
gaattggatttctaccttccgctgcacagtgtgtgtgtggaaaggctcaagcacaccgtt
cgcaagggacgcatctatatgcaaaagggttacggcattattgctttgttaacctctgag
atagttcctatcatggagcttctctcgtccatgaagactcatagcgcaccagacgaagtt
gatatcaaagacacattattgaatgatgatgatataggtgacagctgtcatgaggacttt
ctgcacaaagccgtaaactctcatctacagacttgtggctgttccgttgttgttggcagt
aacccagacaaagtcaataagattgtgctgacgctatgtctgttcctaactcccgctgag
aggaagtgctcacgactgtgccgagctgatggcactttcaaatacgacactggtctgttt
gttcagggcctcctcaaggactccacagggagcgttgtgttgccttaccgacaggtcctc
tcttccccctatccgtctactcacattgacgtggacattaacacagtgaagcagatgcct
ccttgccacgaacacacgtaccatcagcgccgctacatgcgggccgagctcagtgccctc
tggaagactaccagtgaggatgaattcagccctgaacaactcatcaacatacaagaatcg
tttactcctgacttgaatatatttcaggatgtcatgcacaaagatacactggtaaagtct
ttcatagatgaggttttccttttgaaaccaggtctaaaccttcggagtgtatacttgtcc
cattttctcctactgcttcacaggaaggccctgactctgctcagatatatcgaggatgac
actcagaaggggaagaagccattccggtcactgcgtaatctgaagactgacctggacttg
actgtagaaggagacctgaacatcatcatggcaatggcagagaagctgcggccgggcctt
cactcctttgtgttcgggaagcccttcttcactagtgtgcaggagcgtgatattctaatg
aacttctga
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