Ictalurus punctatus (channel catfish): 108264923
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Entry
108264923 CDS
T04658
Name
(RefSeq) class II histocompatibility antigen, B-L beta chain isoform X1
KO
K06752
MHC class II antigen
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04145
Phagosome
ipu04514
Cell adhesion molecules
ipu04672
Intestinal immune network for IgA production
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108264923
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108264923
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
108264923
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108264923
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108264923
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108264923
Exosomal proteins of epithelial cells
108264923
Exosomal proteins of breast milk
108264923
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C1-set
MHC_II_beta
MMgT
SpoIIIAH
C2-set_2
MLANA
Ig_3
Cna_B
DUF2196
Motif
Other DBs
NCBI-GeneID:
108264923
NCBI-ProteinID:
XP_053535982
Ensembl:
ENSIPUG00000021529
UniProt:
A0A9F7TJV7
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All DBs
Position
5:393633..400083
Genome browser
AA seq
282 aa
AA seq
DB search
MSPCAPSLLCMLLGLFTFRAVDGCYAQAYRQCYYTRDLVTIEFIYSWYFNKAEYLRYNST
TDRYTGFTVYGAKMAESLNLDPKNSLYSHVYTFCKYNSDNYASNVLKKVKPKVMVRSQTS
EPDILPAMLLCTVYDYHPKGIKVSWLRDGKVVTEGVSSTEELSDGDWYYQFHTYLEYIPK
PGENISCMVQHESLTQPLIYTWKPSLPVDQRNKLIIGIFLLVLGMVLAIAGFLYYMLGSK
GRVAKQTSQTISLERTTSEISESSQSSQTSQTSQTALQTSNP
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgtgcgctccttctcttctctgcatgctgctgggtttatttacctttagagca
gtagatggatgctatgcacaagcctacaggcagtgttattacactcgggatctggtcacc
attgaattcatttactcttggtacttcaacaaggctgaatatctgagatacaacagcaca
acggatagatacacaggattcacagtttatggagcgaaaatggcggaatcgctgaatcta
gacccaaaaaacagtctctattcccatgtgtacacattctgcaaatataacagcgataac
tatgcgtctaatgttctaaagaaagtgaagcccaaggtcatggtgaggtcacagacatct
gagcctgacattctcccggccatgttgctgtgtactgtgtatgattatcaccccaaagga
atcaaagtgtcatggctgagagacggcaaggtcgtgactgagggagtttcctccacagag
gagctttcagatggagactggtactatcagttccacacttatctagagtacataccgaaa
cctggagagaacatctcctgcatggtgcagcacgagagcttaacacaacccctcatatac
acctggaagccttcacttcctgtggatcagaggaacaagctgatcatcggtattttcctc
ctggtgttgggaatggttttggccatcgctggatttctttattacatgctgggatctaaa
ggacgtgttgcaaagcaaacttcacagactatatctttagaacgcactacttcagagatt
tcagagtcttcacagtcttcacagacttcacagacttcacagacggctttacaaacttca
aatccataa
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