Ictalurus punctatus (channel catfish): 108266028
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Entry
108266028 CDS
T04658
Name
(RefSeq) intraflagellar transport protein 122 homolog isoform X1
KO
K19656
intraflagellar transport protein 122
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ipu03037
]
108266028
Cilium and associated proteins [BR:
ipu03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
108266028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
Beta-prop_IFT122_2nd
Zn_ribbon_IFT122_C
Beta-prop_EML_2
Zn_ribbon_IFT122
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
EIF3I
ANAPC4_WD40
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_NUP159_NUP214
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
TPR_IF140-IFT172
TPR_GEMI5
TPR_IFT80_172
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_Vps41
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_NWD2_C
TPR_COPA_B
Beta-prop_SPT8
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
108266028
NCBI-ProteinID:
XP_017324456
Ensembl:
ENSIPUG00000023491
UniProt:
A0A2D0R320
LinkDB
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Position
5:complement(8448277..8496907)
Genome browser
AA seq
1188 aa
AA seq
DB search
MRAVPTWIDKVHDRDKVEQCIYDLAFKPDGTQLIVAAGNRVLVYDTADGTLIQPLKGHKD
TVYCVAYAKDGKRFASGSADKSIIIWTSKLEGILKYTHNDSIQCVAYNPVTHQLASCSSG
DFGLWSPEQKSVSKHKVSSKITCCGWTNDGQYLALGMMSGVVSIRNKNGEEKVKIERPGG
TASPIWSITWNPSKDEHHDILAVADWGQRLSFYQLSGKQIGKDRQLNFDPCCVSYFSKGE
YIVMGGSDKQVSLYTKDGVRLGTIGEQNSWVWTCRVKPDSNYVVVGCQDGTIAFFQLIFS
TVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCRELVKKIAIYRSRLAIQLPEKILIYE
LSSDDSSDMHYRVKEKIGRRFECNLLVVCSQHIILCQEKRLQCLSFSSVKEKEWIMESLI
RYIKVIGGPPGREGLLVGLKNGAILKIFVDNPFPITLLKQNTSVRCLDMSTSRSKLAVVD
EHNTCLVYDIQTKELLFQEPNANSVAWNTQCEDMLCFSGSGYLNIKASNFPVHQQKLQGF
VVGYNGSKIFCLHVYSMAAVEVPQSAPMYQYLERRMFKEAYQIACLGVTDSDWRDLATEA
LEGLDFDTAKKAFIRVRDLRYLELINSIEERKKRGENNSDLFQADVYAYQGKFHEAAKLY
KRSGHDNRALAMYTDLRMFEYAKNFLASADPKDTKLLMKKQADWAKNSKEPRAAADMYLS
AGENMKAIEIIGEHGWVDMLIDLARKLDKAEREPLARCAEFFQKLNHHGYAAETYSKMGD
LKALVQLHVEARHWDEAFTLVEKHPQYKDDVYVPYAQWLAENDRFEEAQKAFHKAGRQAE
AVKVLEQLTHNAVVESRFNDASYYFWMLSMQCLDIARDNEEKREEMLKKFHSFQHLAELY
HVYHSIHRYMVEPFSSNMPETLFNLSRFLFHNLTKDIPLGISKVYTLYALAKQSKALGAY
KVARHAFEKLQGLKIPAQFQESMELSSLTVRSKPYRDSEDLIPMCYRCSTHNPLLNNQGN
ACVNCRQPFIYSASSYEVLPLVEFYLEDGIADEEAVSLIDLEVPRADKKTTRWQEMNRGD
SQTLRLDDDVEHPEEDPFMAKLSFEQGGSEFVPVVVSRAVLSSMSRRDVLIKRWPKPLRW
QYYRSLLPDVSITMCPSCFQMFHSEDYELLVLQHNCCPYCRRPIDEPN
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgcgagctgttcccacatggatagacaaagtgcacgaccgagacaaagttgaacaatgc
atttacgatttggctttcaaacctgacggcactcagctcatagtagcagccggaaacaga
gttctggtttatgacacagctgatggaactcttatacagccactgaaaggacataaagac
acggtgtactgtgtggcctatgctaaagatggaaaacgttttgcgtcaggatccgcagac
aagagcatcatcatatggacctctaaactggagggaattctcaaatacacccacaatgac
tctatccagtgtgttgcgtacaaccctgtcacacaccagctggcatcctgctcttcgggg
gactttggtctttggtccccagagcagaaatcggtgtccaagcacaaagttagcagcaag
atcacttgttgtgggtggacgaacgatggccagtatctggctctgggcatgatgagtggt
gtggtgagcatcaggaacaagaacggagaggagaaggtgaagatcgagaggccgggtggc
acggcatcgcctatctggtctatcacctggaacccttccaaggatgagcaccatgatatc
ttggcggtggctgattggggtcaaagactgtccttctaccagctcagtgggaaacagatt
ggcaaggacaggcagttgaactttgacccctgctgcgtgagctatttctccaaaggcgag
tacatcgtgatgggaggctcagacaagcaggtatccctctacactaaagatggcgttcgt
ctcgggaccatcggagagcagaactcctgggtctggacctgcagggttaaaccagactcc
aactatgtggtggtgggttgtcaggatggcaccatagcgttcttccagctgattttcagc
acagtgcacggtctctataaggaccgctacgcctacagagatagcatgactgatgtcatc
gtccaacacctcatcactgagcagaaagtgcgcataaagtgtcgtgagctagtgaaaaag
attgccatttaccgcagccggctagccatccagctaccagagaagattctgatttatgag
ctgagttcagacgactcttctgacatgcactaccgcgtcaaagagaaaatcggccggcgc
tttgagtgtaaccttctcgttgtctgctctcagcacatcatcctctgtcaggagaagaga
ctacagtgtttgtcatttagtagtgtgaaagagaaggaatggatcatggagtctctgatt
cgctacatcaaagtgatcggtggcccaccgggaagggaggggcttctggtcggcctcaaa
aacggagcaattttgaagatctttgtggataacccattccctatcacactgctgaagcag
aacacatctgtgcgctgtctggacatgagcacgtctcgcagtaagctggccgtggtggac
gagcataacacctgcctcgtctacgacatccagaccaaagaactgctattccaggagccc
aatgcaaacagcgtggcgtggaacacacagtgtgaggacatgctgtgcttctcaggcagt
ggctatctgaacatcaaggcgagcaatttccctgtgcaccagcagaagcttcagggcttt
gtcgtgggctacaatggctcaaagatcttctgcctgcatgtctactccatggctgctgta
gaggtgcctcagtcagctccgatgtatcagtatctggaaagacggatgtttaaggaagct
tatcagattgcttgcctgggcgtgacggacagtgactggagggatctggctacagaagcg
ctggaaggactggactttgacacagccaaaaaggcctttatcagggtccgtgacctgcgc
taccttgagctcatcaacagcattgaagagaggaagaagagaggtgagaacaacagcgat
ctctttcaagcggacgtctacgcgtaccagggcaaattccacgaggccgctaaactctat
aagagaagtggccatgacaacagagcgctcgccatgtatacagacctgcgcatgtttgag
tatgccaagaacttcctggcttcggcagaccctaaagacacgaagctgctgatgaagaag
caggcggactgggctaagaacagtaaagagccgcgtgctgctgccgacatgtatctaagc
gcaggagagaacatgaaggccatcgagatcattggagagcacggttgggtggacatgttg
atagatttggcacggaagctcgataaagcagagcgcgagccattggccaggtgcgctgaa
ttcttccagaagttgaatcaccatggttacgcggctgagacctactccaaaatgggcgac
ctgaaagccttggtgcagctacatgtagaggccaggcactgggatgaggctttcactctg
gtcgagaagcatcctcagtacaaggatgatgtgtatgttccgtatgcacagtggcttgct
gagaacgaccgcttcgaagaggcccagaaagctttccacaaggctggccggcaagcggag
gctgtaaaggttttggagcagcttacccacaatgctgttgtggagagccgattcaacgac
gcatcatactacttctggatgctctccatgcagtgtctggatatagcacgagataatgag
gagaagagggaggagatgttgaagaagttccacagttttcagcatttggctgagctgtac
catgtctaccactccattcatcgctacatggttgagcccttcagttcaaacatgccagag
actctcttcaacctctcgagattccttttccacaacttgaccaaagatattcctctgggc
atctccaaagtctatactctgtatgcattggctaagcagagtaaggcactgggggcctat
aaggtggcacggcatgcctttgagaagctccagggcctcaagatcccagctcaattccag
gagagcatggagctcagctcgctcactgtccgttccaaaccctaccgggacagtgaagac
ttaattccaatgtgttaccgctgttccacccacaacccgctgctaaacaaccagggcaat
gcctgcgttaactgcagacaaccgtttatttactctgcctcctcttacgaagtccttcct
ttggtggagttctatttagaggacggtatcgcagatgaggaagcagtatctctgattgac
ctggaagtgccacgagcggacaagaagacaacccgctggcaggagatgaacagaggcgat
agtcagactctaaggctggatgatgatgtcgaacatcctgaagaagatccctttatggcc
aaactaagttttgagcaggggggcagtgagtttgttccagtcgtggtcagtcgtgcagtg
ttgagctccatgtcgagaagagatgtattaataaagcgctggcccaagcctttgcgctgg
cagtactaccgctctctactgcctgatgtcagcattaccatgtgtccctcttgctttcag
atgttccacagcgaggactacgaattattggttctccagcacaactgttgtccttactgt
cgcagacccatcgatgagcccaactag
DBGET
integrated database retrieval system
