Ictalurus punctatus (channel catfish): 108267320
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Entry
108267320 CDS
T04658
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K20894
shank-associated RH domain-interacting protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04217
Necroptosis
ipu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
108267320
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108267320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108267320
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
108267320
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
ubiquitin
PH
Ubiquitin_2
DUF7285
Motif
Other DBs
NCBI-GeneID:
108267320
NCBI-ProteinID:
XP_017326833
UniProt:
A0A2D0R8B6
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Position
7:complement(28725145..28738177)
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AA seq
418 aa
AA seq
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MALSSGVWAPVFPSPALQQGSGSGCGTVLMSVRVSVSRATLRTLRSLRSPGVCEDDAALR
LQLSMDPNRPGDFRLTLRDSGSNGRIMSLAEFELCAVRYEIKSPRCHELCVIKPPHDTLT
FTFRSEQEAQEWATVMISSLREAHRVAGIASQPTEDSVDYLKPVEQSAALSLSAKEELCA
ELARAIEAGDAQAAVQHATSLAHQQIPLTIQPARKDSEDGEISLAVAVEDATSSCCVTVK
VAPHMTVASLKQQMFAEYGFHPRVQRWVIGQCLCSEQRSLVSYGVCRDGDTAFLYLLSAR
HARLSRLQCQQDQESALLTPTPKPAPTLAPASHDWRGYSTLPPRLHHSNTGGGGGAGKHS
ISDSMNLERLQLGGPGLGWSCPSCTFINKSTRPGCEICSTERPTRPELSASEDAALLL
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggctctgagttcgggggtttgggctccggtttttccgtctccggcgctccagcagggc
tcgggttcgggctgcggtacggtgctgatgtcggtgcgggtgtcggtgtcgcgggcgacg
ctgcgaactctgcggtcgctccgttctcccggtgtctgcgaggatgacgcggctctccgc
ctacagctcagcatggacccgaaccggcccggagacttccgcctcaccctcagagactcc
ggcagtaacggcaggatcatgtctctggccgagttcgagctgtgcgccgtgaggtacgag
atcaaatcacctcgctgccacgaactgtgcgtcatcaagccgccgcacgacacgctgacc
ttcaccttccgcagcgagcaggaggcccaggagtgggccaccgtcatgatctcgtcactg
agggaagcccacagagtcgcaggcatcgcctcgcagcccaccgaggactcggtagactat
ctgaaacctgtcgagcagagcgcagccttgtcattatcagctaaagaggagctgtgtgct
gagctggccagagccatcgaggccggggacgctcaggcggcggtgcagcacgccacgtcg
ctggcacaccagcagattccgctcaccatccagccggctcgaaaggactccgaagacgga
gagatcagcttggcagttgcggttgaagacgccacgtcgtcctgttgcgtcacggttaaa
gtcgccccacacatgactgtggcgtctctcaagcagcagatgtttgccgaatacggtttc
cacccgcgagtgcagcgctgggtcatcggtcagtgtttgtgctctgagcagcgctcgctg
gtgtcgtacggcgtgtgtcgagacggagacacggcgtttctctacctcctctcagcgcgc
cacgcccgccttagccgtctgcagtgccagcaggaccaggagagcgccctcctcacaccc
acgcccaaaccggcgccgaccctggcaccggccagtcacgactggagaggctacagcacg
ctgccgccccgactccatcactccaacacagggggcgggggcggagctgggaagcacagc
atcagtgacagcatgaacctggaaagactgcagctgggtggacccgggcttggctggtcg
tgtccttcgtgtacatttataaacaagtcgacgaggcccggatgtgaaatctgcagtaca
gaaagacccactcgaccggagctcagcgcatccgaggacgcggctcttctcctataa
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