Ictalurus punctatus (channel catfish): 108268705
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Entry
108268705 CDS
T04658
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X2
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108268705 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108268705 (kdm2ab)
04121 Ubiquitin system [BR:
ipu04121
]
108268705 (kdm2ab)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108268705 (kdm2ab)
Enzymes [BR:
ipu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
108268705 (kdm2ab)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
108268705 (kdm2ab)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108268705 (kdm2ab)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108268705 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
108268705 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
Cupin_8
JmjC
F-box
PHD
LRR_At1g61320_AtMIF1
Cupin_1
BSP_II
Motif
Other DBs
NCBI-GeneID:
108268705
NCBI-ProteinID:
XP_017329304
Ensembl:
ENSIPUG00000015594
UniProt:
A0A2D0RFI9
LinkDB
All DBs
Position
8:complement(25069855..25085389)
Genome browser
AA seq
1266 aa
AA seq
DB search
MEETRYSKRLRTGTRRRYQDDGISDDEIEGKTTFDLEEKLESSYFNSDLVKIMDGNDFTF
EYIQREGLRDPIIFTTADGLGIQMPDPDFSVSDVKLFVGSRRMIDVMDVSTQKGMEMSMS
QWRRYYETPASEREKLYNVISLEFSHTKLEHLVKRPASVDMIDWVDIMWPRHLKERQRDS
TNAITDMQYPKVQKYCLMSVKGCFTDFHIDFGGTSVWYHILRGRKVFWLIPPTPHNLELY
ENWVLSGKQGDIFLGDKATACQRVELNQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHSFN
IPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPEFQRHSLGIGLT
KDDFAKPNNEDTEEKEEVKEEGDEEEEEEEAPSPPARPGVKVHLTPLELEGLWQLLHKLE
ELPAHKKCVPAGIRNAPALLSDIRALLEEHANDDPKLSYTGKPIVTWPKRPSWYRPLPPH
PSVMYRPRASGPSPSMPPVPRPTKPTSSISALRRRRVRCKRCEGCRRSHCGDCTYCRDMK
KFGGPGRLKKSCILRQCLSPALPLTAICTICKEGSQEDAEGTQTTQTLMECSECGQITHP
ECITVPGEGVINKDLPSCWECPKCVQDKNTESSSSNSEEEGKSTVTASSPTSAPPAKRAY
REGIGVEGLRLGRRVQPPPSPSSLPLNRSRRQPPPSQRILLQHQQSRKRAGALERQHRKR
IKLERSKLFQSLLRRRSLERGSAIRAGLGRGVTRRRGMPSYQGREVRLRSEARGGALRGR
TAREEDGDSNNKEEEGEKTERIENGLGGKENRPRRYGGRPTEDENGNSRQNGDRETEGEE
SVEQTRSDSSAALSDETRDQRSCVTVTLQPSRGRRDPGTIVPKLEANVSSVSHTQSDSDF
QGKSLLRPPLRRDSRRADKARSRSHLHAAGPQLRSPIFTRSTSKHAHVSPSLRCSSGESH
HNTARERNGKNVRPERGKPPASSHSLVSCTSPEQNGASEPGWGRLVWVSVFRYLSRSELC
VCMAVCKSWYKWGCDKRLWTHISLSRCQSISPQALSGIIKRQPVTLDLSWATISKKQLTW
LVNRLPGLKDLVLSGCNWASVSALSSPSCPLLRSLDLRWADGVKDAQIRELLSPPGSNNR
SQLRNVQCLRLCGLEVTEATLRLIIRHMPQLTRLELSHCPLTDNALNLLTAVGSSTRNTL
AHLNLAGCSRLTDHCLVYLQRLSCLSVLDLRSCKGISREACEKFIFELSVNALYCLSDDK
LIQRIS
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaacccgctacagcaagcgcctgcgaacaggaacacgccggcgctaccaggat
gatggcatctcggatgatgagattgaggggaagacgacctttgacctggaggaaaagctt
gaaagcagctacttcaattcagacttggtcaaaatcatggatgggaatgacttcactttt
gagtacatccagcgggaggggcttcgggaccccatcatctttactacagcagatggtctt
ggcattcagatgcccgatccagacttcagcgtgagtgacgtgaaactgtttgtaggcagt
cgcaggatgatcgacgtgatggacgtgagcactcaaaagggcatggagatgtcaatgagt
cagtggaggcggtactacgaaactccagcctcggaaagggaaaagctgtacaacgtcatc
agtctggagttcagtcatacgaaactggagcatctcgtcaagagacctgcctcagttgat
atgatcgactgggtggatatcatgtggccgcggcacctgaaggagagacagagagattcc
accaacgccatcactgacatgcagtaccccaaagtacagaagtactgtctgatgagtgtg
aagggctgctttacagacttccatatcgactttggtggcacatcagtctggtatcacatc
ctgaggggacgcaaggtgttctggctgatcccgcccacgccacacaacctggagctctat
gagaactgggtattgtcaggaaaacagggtgacatcttcctcggggacaaagccaccgcc
tgccagcgcgttgagctaaatcagggttacacctttatgatcccctcaggttggatccat
gcagtctacacacctgaggatactctggtgttcggagggaatttcctgcacagttttaac
attcctatgcagctgaacatctacaacatcgaggaccgcacacgggtcccagctaagttc
cgttacccattctattacgagatgtgttggtacgtgttggagcgttacctctactgtctg
accaacacctctcatctaaccccggagttccagagacactcgctgggcatcgggctgaca
aaagatgactttgctaaaccaaacaacgaagataccgaggaaaaagaggaggtgaaagaa
gaaggtgacgaggaggaggaggaagaagaagctccctctcctccggcccgtcctggagtg
aaggtccacctgacgccactggagctggaaggactgtggcagctgctgcacaaactggag
gagttgcccgcccacaagaagtgtgtacctgcagggatcagaaacgctccagcacttctc
agtgacatccgtgccctgctagaagagcatgccaacgatgatccaaaattgtcttacact
ggaaaacccattgtcacatggcccaaaaggccctcgtggtacaggccgctccccccacac
ccgtccgtaatgtatcggccacgcgcttcaggtccgagcccctcgatgcccccggtgccg
cggccaaccaagcccacatcttcaatctcggctctgaggcggcggcgtgtacgctgtaaa
cgctgcgagggctgcaggcgctcccactgcggagattgcacctactgcagggacatgaag
aagttcggcggcccgggtcgactgaagaagtcctgcattctcagacagtgcctgtctccg
gcactgcctctgaccgcaatctgcaccatatgtaaagaggggagccaggaagatgccgaa
ggcacccagaccacccaaacactcatggagtgctccgaatgtggtcagatcacacacccg
gaatgtataacggtcccaggggagggtgtgatcaataaggaccttcccagttgctgggaa
tgtcccaaatgtgtccaggataagaacactgagtcttccagcagtaattcagaggaggag
ggtaaaagcactgttacagctagctctccaacctccgctcctcctgctaagcgggcgtac
agggagggcatcggggtggaggggctgcgtttggggcgcagggttcaacctcccccgtca
ccctcgtccctgcctctgaatcgctcccgacgccaacctccaccctcacagagaatccta
ctgcagcaccaacagagccgcaagagagccggggcactggagcgacaacacaggaagagg
atcaaattagagaggagcaaactcttccagtcgctcttgcgtcggcggagtttggagaga
ggaagcgcgatcagggcagggcttggcaggggcgtgacgcgcaggaggggcatgccttcc
tatcagggaagagaagtgcggcttagaagcgaagcaagaggcggagctctgcggggaagg
acggcgagagaagaggatggagacagcaataacaaagaggaagagggcgagaagactgaa
aggatcgagaacgggctgggaggtaaagaaaaccggccgcggagatacggaggaaggccg
actgaagacgagaacggaaactctcgacagaatggggatcgggaaactgagggggaggag
tccgtagagcagactcgctcggactcttccgcagcactcagcgacgagaccagagatcag
aggtcatgcgtgactgtgactttgcagccgtcacgaggcagacgggaccccggcactatc
gtccccaagctagaagcgaacgtatcctctgtaagccacacccaaagcgacagcgacttc
cagggcaagtccctgctccgcccgccactccggcgcgattcgcgccgtgcggacaaagct
cgctctcgctcacacttgcacgcagccgggccgcaacttcgatcccccatctttaccagg
agcacttccaaacacgctcacgtgagtccgagcttacggtgtagctctggagagtcgcat
cacaacacggcgcgagagaggaatgggaaaaacgtgcgaccggagagagggaagcctcct
gcctcctctcacagcttggtgtcctgcacatcacctgagcagaacggagcgagtgaacca
ggctggggcaggctggtgtgggtgtccgtcttccgctacctgtctcgatccgagctgtgc
gtctgcatggctgtgtgcaagagctggtacaaatgggggtgcgataagcgcttgtggaca
cacatcagtttgagccgctgccagtccatcagcccgcaggccctctccggcatcatcaag
cgccagccggttacactggacctgtcctgggccacaatatccaagaaacagctcacatgg
ctcgtcaaccgattaccagggttgaaagatctggtgctttcagggtgtaactgggcatcc
gtgtccgctctgagctctcccagttgtcctttactgcggtccttagacctacgctgggca
gacggcgtcaaagatgcacagatcagagagctgctcagcccaccaggaagtaataaccgt
tcccagctgagaaacgtgcagtgcttgaggctgtgtggtctggaggtgacggaggccact
ctgaggctgatcatcaggcacatgccccagttgacgaggctcgagctctcacactgccct
ctgactgacaacgctctcaacctcctcaccgccgtgggctcatccacacgcaacacactc
gcacacctcaacctagcaggttgcagtcgtctgacggaccactgtctggtgtacctgcag
cgtttgtcctgtctttctgtgctggacctgcgcagctgtaaaggaatctcccgggaggcc
tgtgagaaattcatcttcgaactgtccgtcaatgccctctactgcctatcagacgataaa
cttatccagagaatatcctag
DBGET
integrated database retrieval system
