Ictalurus punctatus (channel catfish): 108269283
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Entry
108269283 CDS
T04658
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1 isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108269283 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108269283 (tdg.1)
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
108269283 (tdg.1)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
108269283 (tdg.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
108269283
NCBI-ProteinID:
XP_017330543
Ensembl:
ENSIPUG00000007554
UniProt:
W5UI68
LinkDB
All DBs
Position
8:complement(18088585..18098671)
Genome browser
AA seq
430 aa
AA seq
DB search
MDERSYGSLPHVPSDYVQHWVQSAQQHLQALHAQYSHMANRNVAHFMEGHGEEPGMMEMP
AQEPPAAPPEPGAPQKAPTKGKRGRPASKEPKAKPGPKPKKAKAVKAGQQAEGTQEKIDE
SFKKVKRKIDRFKGMSEEEVLKKTLPDILTYNLDYVIIGINPGLMAAYIGRWFPGPGNHF
WKCLFLSGFTEQLLNHMHDETLPEKYGIGFTNMVARATPGSKDLSSKELREGGKILVEKI
KKFKPLIAVFNGKCIYEMFCREIFGKKPKTLEFGLQPHRIPDSETALYLMPSSSARCAQF
PRAQDKVHFYIKLRELRDELKGVAKPREVEEVNYTFDLGLAKEDAKRMAIKEEQYDPGYE
AAYGGAYGEPGNEEGNGHCAFASGEAEAAEKQPRSPNAVSQLPDGQWMTNSFADQIPEIG
SSSQVQAEAV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagaagttacggatctttgcctcatgtgccctcggattatgttcagcactgg
gttcagtcagcacagcagcatctccaagccctccacgcacagtattctcatatggctaac
agaaatgttgcccacttcatggaaggacatggggaagaacctggaatgatggaaatgcct
gcccaggagccgcctgctgcaccgccagagcccggggctccccagaaagctcccactaaa
gggaagaggggcagaccggcaagcaaagagcccaaagctaaaccaggccccaagcctaag
aaggccaaggcagtcaaagcgggacaacaagctgaagggacacaggagaagattgacgag
tcctttaagaaagttaaaaggaaaatcgatcgcttcaagggcatgtccgaggaggaggtc
ctgaaaaagaccctgccagacatccttacatacaacctggactatgtaattattggaatc
aatccaggtctgatggctgcctacattggaagatggttccctggacctgggaaccacttt
tggaagtgccttttcctgtctggatttactgaacagctgctgaaccacatgcatgatgag
actctccctgagaaatacggcattggcttcactaacatggtggcaagagcaacaccggga
agcaaagatctctcaagtaaagagcttcgagaaggtggcaaaattttagtggagaagatt
aaaaagttcaaacctctcatagcagttttcaatgggaaatgtatatatgaaatgttctgt
agagagatatttgggaaaaagcccaaaactctggaatttggcttgcagccacacaggatt
cctgactctgagacggcgttgtatttgatgccctcctcaagtgctcgctgtgctcagttt
cctcgagctcaggacaaagtgcacttctacatcaagctcagagaactccgagatgaactg
aagggagtggccaaacccagggaagtagaggaagtcaattacacctttgatcttggcttg
gctaaagaggatgctaagagaatggccattaaggaggagcagtacgatcctggctatgag
gcggcgtatggaggggcatatggggaacctggaaatgaggaaggcaatggccactgtgcc
ttcgcttctggagaagcagaagcagcagagaagcagcctaggagtccaaatgcagtgagc
cagcttccggatggccagtggatgaccaactccttcgctgatcagattcccgagattggc
agctcatcacaagtgcaggcggaggccgtatga
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integrated database retrieval system
